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Update GLN environment to Python 3.9 #103

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merged 2 commits into from
Oct 15, 2024
Merged

Update GLN environment to Python 3.9 #103

merged 2 commits into from
Oct 15, 2024

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kmaziarz
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Unlike all other supported single-step models, GLN uses a separate environment defined with docker, as it depends on building rdkit from source. GLN is also the only model using Python 3.7 - a version which reached its end-of-life last year. This PR keeps the docker-based setup, but updates the GLN code and environment to Python 3.9, so that in a future version of syntheseus we can raise the required Python version to 3.9 and get rid of backward compatibility hacks.

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Seems good to me- I didn't try running it myself since I don't actually have docker installed, but the changes on your custom GLN repo look pretty minimal (just changing a single pytorch function call). If the tests pass then I think everything should be ok?

@kmaziarz kmaziarz merged commit 78b2caf into main Oct 15, 2024
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@kmaziarz kmaziarz deleted the kmaziarz/update-gln branch October 15, 2024 12:59
kmaziarz added a commit that referenced this pull request Nov 29, 2024
Python 3.7 is well past its end-of-life; we mostly maintained support
for it due to it being required to run GLN, which since #103 is no
longer the case. This PR raises the minimum Python requirement to 3.8
and removes compatibility hacks that are not needed anymore. The
recently released `v0.5.0` will thus be the last version to support
Python 3.7, which users can fall back to if they really need to.
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2 participants