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docs(examples): use pooch for data access in tutorials/examples #3047

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docs(examples): use pooch for data access in tutorials/examples

docs(examples): use pooch for data access in tutorials/examples #3047

Workflow file for this run

.github/workflows/mf6.yml at 83975f2
name: FloPy Modflow6 continuous integration
on:
schedule:
- cron: '0 8 * * *' # run at 8 AM UTC (12 am PST)
push:
pull_request:
branches:
- master
- develop
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
test_mf6:
name: Modflow6 FloPy tests
runs-on: ubuntu-latest
defaults:
run:
shell: bash
steps:
- name: Checkout flopy repo
uses: actions/checkout@v4
- name: Setup Python
uses: actions/setup-python@v5
with:
python-version: 3.9
cache: 'pip'
cache-dependency-path: pyproject.toml
- name: Install Python dependencies
run: |
pip install --upgrade pip
pip install https://github.com/modflowpy/pymake/zipball/master
pip install https://github.com/Deltares/xmipy/zipball/develop
pip install https://github.com/MODFLOW-USGS/modflowapi/zipball/develop
pip install .[test,optional]
pip install meson ninja
- name: Setup GNU Fortran
uses: fortran-lang/setup-fortran@v1
with:
compiler: gcc
version: 13
- name: Checkout MODFLOW 6
uses: actions/checkout@v4
with:
repository: MODFLOW-USGS/modflow6
path: modflow6
- name: Build and install MF6
working-directory: modflow6
run: |
meson setup builddir --buildtype=debugoptimized --prefix=$(pwd) --libdir=bin
meson install -C builddir
meson test --verbose --no-rebuild -C builddir
- name: Update package classes
working-directory: modflow6/autotest
run: python update_flopy.py
- name: Install executables
working-directory: modflow6/autotest
env:
GITHUB_TOKEN: ${{ github.token }}
run: pytest -v --durations=0 get_exes.py
- name: Run tests
working-directory: modflow6/autotest
run: pytest -v --cov=flopy --cov-report=xml --cov-append --durations=0 -n auto -m "not repo and not regression"
- name: Print coverage report before upload
working-directory: ./modflow6/autotest
run: coverage report
- name: Upload coverage to Codecov
if:
github.repository_owner == 'modflowpy' && (github.event_name == 'push' || github.event_name == 'pull_request')
uses: codecov/codecov-action@v5
with:
files: ./modflow6/autotest/coverage.xml
test_mf6_examples:
name: MF6 examples FloPy tests
runs-on: ubuntu-latest
defaults:
run:
shell: bash
steps:
- name: Checkout flopy repo
uses: actions/checkout@v4
- name: Checkout MODFLOW 6
uses: actions/checkout@v4
with:
repository: MODFLOW-USGS/modflow6
path: modflow6
- name: Checkout MF6 examples
uses: actions/checkout@v4
with:
repository: MODFLOW-USGS/modflow6-examples
path: modflow6-examples
- name: Setup Python
uses: actions/setup-python@v5
with:
python-version: 3.9
cache: 'pip'
cache-dependency-path: pyproject.toml
- name: Install Python dependencies
run: |
pip install --upgrade pip
pip install https://github.com/modflowpy/pymake/zipball/master
pip install https://github.com/Deltares/xmipy/zipball/develop
pip install https://github.com/MODFLOW-USGS/modflowapi/zipball/develop
pip install .[test,optional]
pip install meson ninja
pip install -r modflow6-examples/etc/requirements.pip.txt
- name: Setup GNU Fortran
uses: fortran-lang/setup-fortran@v1
with:
compiler: gcc
version: 13
- name: Install executables
uses: modflowpy/install-modflow-action@v1
- name: Build and install MF6
working-directory: modflow6
run: |
meson setup builddir --buildtype=debugoptimized --prefix=$(pwd) --libdir=bin
meson install -C builddir
meson test --verbose --no-rebuild -C builddir
cp bin/* ~/.local/bin/modflow/
- name: Update package classes
working-directory: modflow6/autotest
run: python update_flopy.py
- name: Test MF6 examples
working-directory: modflow6-examples/autotest
run: pytest -v -n=auto --durations=0 test_scripts.py