Skip to content
@mortazavilab

mortazavilab

Pinned Loading

  1. PyWGCNA PyWGCNA Public

    PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)

    Jupyter Notebook 225 56

  2. TranscriptClean TranscriptClean Public

    Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome

    Python 67 16

  3. swan_vis swan_vis Public

    A Python library to visualize and analyze long-read transcriptomes

    Jupyter Notebook 57 11

  4. lapa lapa Public

    Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.

    Jupyter Notebook 27 13

  5. Topyfic Topyfic Public

    Topyfic: Reproducible latent dirichlet allocation (LDA) using leiden clustering and harmony for single cell epigenomics data

    Jupyter Notebook 10 1

  6. TALON TALON Public

    Technology agnostic long read analysis pipeline for transcriptomes

    Python 137 30

Repositories

Showing 10 of 18 repositories
  • mortazavilab/mortazavilab.github.io’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Dec 8, 2024
  • Topyfic Public

    Topyfic: Reproducible latent dirichlet allocation (LDA) using leiden clustering and harmony for single cell epigenomics data

    mortazavilab/Topyfic’s past year of commit activity
    Jupyter Notebook 10 MIT 1 0 1 Updated Dec 4, 2024
  • PyWGCNA Public

    PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)

    mortazavilab/PyWGCNA’s past year of commit activity
    Jupyter Notebook 225 MIT 56 15 4 Updated Nov 5, 2024
  • mortazavilab/parse_pipeline’s past year of commit activity
    Jupyter Notebook 3 2 0 0 Updated Oct 31, 2024
  • cerberus Public
    mortazavilab/cerberus’s past year of commit activity
    Jupyter Notebook 16 1 2 1 Updated Jul 30, 2024
  • cosmos-cluster6 Public

    UCI COSMOS Cluster 6: Genes, Genomes, and Skeletal Muscle Dystrophies

    mortazavilab/cosmos-cluster6’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jul 25, 2024
  • swan_vis Public

    A Python library to visualize and analyze long-read transcriptomes

    mortazavilab/swan_vis’s past year of commit activity
    Jupyter Notebook 57 MIT 11 6 0 Updated Mar 14, 2024
  • TranscriptClean Public

    Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome

    mortazavilab/TranscriptClean’s past year of commit activity
    Python 67 MIT 16 11 0 Updated Jan 31, 2024
  • TALON Public

    Technology agnostic long read analysis pipeline for transcriptomes

    mortazavilab/TALON’s past year of commit activity
    Python 137 MIT 30 23 1 Updated Jan 25, 2024
  • lapa Public

    Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.

    mortazavilab/lapa’s past year of commit activity
    Jupyter Notebook 27 13 10 1 Updated Nov 8, 2023

Top languages

Loading…

Most used topics

Loading…