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Update deps
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@moshi4
moshi4 committed Sep 13, 2024
1 parent 40c7bfd commit 5cc8a80
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104 changes: 46 additions & 58 deletions requirements-dev.lock
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Original file line number Diff line number Diff line change
Expand Up @@ -12,23 +12,19 @@
-e file:.
asttokens==2.4.1
# via stack-data
astunparse==1.6.3
# via griffe
attrs==23.2.0
attrs==24.2.0
# via jsonschema
# via referencing
babel==2.15.0
babel==2.16.0
# via mkdocs-material
backcall==0.2.0
# via ipython
beautifulsoup4==4.12.3
# via nbconvert
biopython==1.83
biopython==1.84
# via pycirclize
black==24.4.2
black==24.8.0
bleach==6.1.0
# via nbconvert
certifi==2024.7.4
certifi==2024.8.30
# via requests
cfgv==3.4.0
# via pre-commit
Expand All @@ -43,13 +39,13 @@ colorama==0.4.6
# via mkdocs-material
comm==0.2.2
# via ipykernel
contourpy==1.1.1
contourpy==1.3.0
# via matplotlib
coverage==7.6.0
coverage==7.6.1
# via pytest-cov
cycler==0.12.1
# via matplotlib
debugpy==1.8.2
debugpy==1.8.5
# via ipykernel
decorator==5.1.1
# via ipython
Expand All @@ -58,39 +54,38 @@ defusedxml==0.7.1
distlib==0.3.8
# via virtualenv
exceptiongroup==1.2.2
# via ipython
# via pytest
executing==2.0.1
executing==2.1.0
# via stack-data
fastjsonschema==2.20.0
# via nbformat
filelock==3.15.4
filelock==3.16.0
# via virtualenv
fonttools==4.53.1
# via matplotlib
ghp-import==2.1.0
# via mkdocs
griffe==0.47.0
griffe==1.3.0
# via mkdocstrings-python
identify==2.6.0
# via pre-commit
idna==3.7
idna==3.8
# via requests
importlib-metadata==8.0.0
importlib-metadata==8.4.0
# via jupyter-client
# via markdown
# via mkdocs
# via mkdocs-get-deps
# via mkdocstrings
# via nbconvert
importlib-resources==6.4.0
# via jsonschema
# via jsonschema-specifications
importlib-resources==6.4.5
# via matplotlib
iniconfig==2.0.0
# via pytest
ipykernel==6.29.5
# via mkdocs-jupyter
ipython==8.12.3
ipython==8.18.1
# via ipykernel
jedi==0.19.1
# via ipython
Expand All @@ -114,11 +109,11 @@ jupyter-core==5.7.2
# via nbformat
jupyterlab-pygments==0.3.0
# via nbconvert
jupytext==1.16.3
jupytext==1.16.4
# via mkdocs-jupyter
kiwisolver==1.4.5
kiwisolver==1.4.7
# via matplotlib
markdown==3.6
markdown==3.7
# via mkdocs
# via mkdocs-autorefs
# via mkdocs-material
Expand All @@ -133,12 +128,12 @@ markupsafe==2.1.5
# via mkdocs-autorefs
# via mkdocstrings
# via nbconvert
matplotlib==3.7.5
matplotlib==3.9.2
# via pycirclize
matplotlib-inline==0.1.7
# via ipykernel
# via ipython
mdit-py-plugins==0.4.1
mdit-py-plugins==0.4.2
# via jupytext
mdurl==0.1.2
# via markdown-it-py
Expand All @@ -147,23 +142,24 @@ mergedeep==1.3.4
# via mkdocs-get-deps
mistune==3.0.2
# via nbconvert
mkdocs==1.6.0
mkdocs==1.6.1
# via mkdocs-autorefs
# via mkdocs-jupyter
# via mkdocs-material
# via mkdocstrings
mkdocs-autorefs==1.0.1
mkdocs-autorefs==1.2.0
# via mkdocstrings
# via mkdocstrings-python
mkdocs-get-deps==0.2.0
# via mkdocs
mkdocs-jupyter==0.24.8
mkdocs-material==9.5.28
mkdocs-jupyter==0.25.0
mkdocs-material==9.5.34
# via mkdocs-jupyter
mkdocs-material-extensions==1.3.1
# via mkdocs-material
mkdocstrings==0.25.1
mkdocstrings==0.26.1
# via mkdocstrings-python
mkdocstrings-python==1.10.5
mkdocstrings-python==1.11.1
# via mkdocstrings
mypy-extensions==1.0.0
# via black
Expand All @@ -179,7 +175,7 @@ nest-asyncio==1.6.0
# via ipykernel
nodeenv==1.9.1
# via pre-commit
numpy==1.24.4
numpy==2.0.2
# via biopython
# via contourpy
# via matplotlib
Expand All @@ -193,9 +189,9 @@ packaging==24.1
# via mkdocs
# via nbconvert
# via pytest
paginate==0.5.6
paginate==0.5.7
# via mkdocs-material
pandas==2.0.3
pandas==2.2.2
# via pycirclize
pandocfilters==1.5.1
# via nbconvert
Expand All @@ -206,40 +202,36 @@ pathspec==0.12.1
# via mkdocs
pexpect==4.9.0
# via ipython
pickleshare==0.7.5
# via ipython
pillow==10.4.0
# via matplotlib
pkgutil-resolve-name==1.3.10
# via jsonschema
platformdirs==4.2.2
platformdirs==4.3.2
# via black
# via jupyter-core
# via mkdocs-get-deps
# via mkdocstrings
# via virtualenv
pluggy==1.5.0
# via pytest
pre-commit==3.5.0
pre-commit==3.8.0
prompt-toolkit==3.0.47
# via ipython
psutil==6.0.0
# via ipykernel
ptyprocess==0.7.0
# via pexpect
pure-eval==0.2.2
pure-eval==0.2.3
# via stack-data
pygments==2.18.0
# via ipython
# via mkdocs-jupyter
# via mkdocs-material
# via nbconvert
pymdown-extensions==10.8.1
pymdown-extensions==10.9
# via mkdocs-material
# via mkdocstrings
pyparsing==3.1.2
pyparsing==3.1.4
# via matplotlib
pytest==8.2.2
pytest==8.3.3
# via pytest-cov
pytest-cov==5.0.0
python-dateutil==2.9.0.post0
Expand All @@ -248,9 +240,8 @@ python-dateutil==2.9.0.post0
# via matplotlib
# via pandas
pytz==2024.1
# via babel
# via pandas
pyyaml==6.0.1
pyyaml==6.0.2
# via jupytext
# via mkdocs
# via mkdocs-get-deps
Expand All @@ -259,26 +250,25 @@ pyyaml==6.0.1
# via pyyaml-env-tag
pyyaml-env-tag==0.1
# via mkdocs
pyzmq==26.0.3
pyzmq==26.2.0
# via ipykernel
# via jupyter-client
referencing==0.35.1
# via jsonschema
# via jsonschema-specifications
regex==2024.5.15
regex==2024.7.24
# via mkdocs-material
requests==2.32.3
# via mkdocs-material
rpds-py==0.19.0
rpds-py==0.20.0
# via jsonschema
# via referencing
ruff==0.5.1
ruff==0.6.4
six==1.16.0
# via asttokens
# via astunparse
# via bleach
# via python-dateutil
soupsieve==2.5
soupsieve==2.6
# via beautifulsoup4
stack-data==0.6.3
# via ipython
Expand Down Expand Up @@ -310,17 +300,15 @@ tzdata==2024.1
# via pandas
urllib3==2.2.2
# via requests
virtualenv==20.26.3
virtualenv==20.26.4
# via pre-commit
watchdog==4.0.1
watchdog==5.0.2
# via mkdocs
wcwidth==0.2.13
# via prompt-toolkit
webencodings==0.5.1
# via bleach
# via tinycss2
wheel==0.43.0
# via astunparse
zipp==3.19.2
zipp==3.20.1
# via importlib-metadata
# via importlib-resources
18 changes: 9 additions & 9 deletions requirements.lock
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Expand Up @@ -10,33 +10,33 @@
# universal: false

-e file:.
biopython==1.83
biopython==1.84
# via pycirclize
contourpy==1.1.1
contourpy==1.3.0
# via matplotlib
cycler==0.12.1
# via matplotlib
fonttools==4.53.1
# via matplotlib
importlib-resources==6.4.0
importlib-resources==6.4.5
# via matplotlib
kiwisolver==1.4.5
kiwisolver==1.4.7
# via matplotlib
matplotlib==3.7.5
matplotlib==3.9.2
# via pycirclize
numpy==1.24.4
numpy==2.0.2
# via biopython
# via contourpy
# via matplotlib
# via pandas
# via pycirclize
packaging==24.1
# via matplotlib
pandas==2.0.3
pandas==2.2.2
# via pycirclize
pillow==10.4.0
# via matplotlib
pyparsing==3.1.2
pyparsing==3.1.4
# via matplotlib
python-dateutil==2.9.0.post0
# via matplotlib
Expand All @@ -47,5 +47,5 @@ six==1.16.0
# via python-dateutil
tzdata==2024.1
# via pandas
zipp==3.19.2
zipp==3.20.1
# via importlib-resources

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