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vcf2maf v1.5.4

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@ckandoth ckandoth released this 13 Jul 15:33
  • Fix issues when ALT alleles are a SNP and indel, both non-REF
  • When looking up known variants, match ALT alleles in addition to POS
  • Remove --gencode_basic so VEP maps variants to all possible isoforms
  • Fix exception that could cause blank t_depth or n_depth