Releases · ncats/RaMP-Client

Update the RaMP R package functionality to use SQLite instead of a dedicated database.
Improve table views for pathway analysis.
Fix download from tables.

What's Changed

Development by @tsheils in #114
Development by @tsheils in #115
fix download by @tsheils in #116
feat: update token name for development branch by @bettyli037 in #118
Dev test by @johnbraisted in #119
Ramp server 3 dev by @johnbraisted in #121
explicit RMariaDB::MariaDB() call in db.R by @johnbraisted in #122
Ramp server 3 dev by @johnbraisted in #123
update install.R to include BiocFileCache installation by @johnbraisted in #124
Create build.yml by @tsheils in #125
Development by @tsheils in #126
fixing chemical enrichment, ui layout by @tsheils in #127
added 4 Rhea reaction endpoints by @johnbraisted in #128
plumber reaction endpoint parameter patch by @johnbraisted in #130
minor change to trigger deployment of RaMP-DB for API by @johnbraisted in #131
Development by @tsheils in #132
Development by @tsheils in #133
updating swagger file and api by @tsheils in #134
Development by @tsheils in #135
Development by @tsheils in #136
fix enrichment download, lint and tests by @tsheils in #137
fix pathway analysis download by @tsheils in #138
Development by @tsheils in #139
Development by @tsheils in #140
update api to build from ramp main by @tsheils in #141
fix common reaction query by @tsheils in #142
updating plumber by @tsheils in #143
adjust models to split by commas instead of semicolon by @tsheils in #144
Update runRamp.R by @tsheils in #146
Updated documentation in plumber.R and extensions.yml by @andyptt21 in #148
pre-fetch the sqlite database for the Docker container by @KeithKelleher in #149
Development by @tsheils in #150

New Contributors

@KeithKelleher made their first contribution in #149

Full Changelog: v2.2.2...v2.5.2

What's Changed

fix: added jenkins & docker by @kannabhargav in #1
Join client server by @kannabhargav in #2
Join client server by @jorgeso in #3
Misc updates by @jorgeso in #4
Development by @jorgeso in #5
added script to generate intersects for upset plot by @jorgeso in #6
Development by @jorgeso in #7
feat: added post deployment step to warmup cache by @mapleknight in #8
Development by @jorgeso in #12
Development by @jorgeso in #13
Development by @jorgeso in #14
updated columns for fisher test results by @jorgeso in #15
Development by @jorgeso in #16
miscelaneous performance changes by @jorgeso in #17
updated about page by @jorgeso in #18
Misc updates by @jorgeso in #19
organized code by @jorgeso in #20
Development by @jorgeso in #21
fnished the most of the chemical analysis by @jorgeso in #22
Development by @jorgeso in #23
Angular update by @tsheils in #25
update about page by @tsheils in #26
Update install.R by @tsheils in #27
make upset plots responsive by @tsheils in #28
minor about updates by @tsheils in #29
fix typo by @tsheils in #30
Angular update by @tsheils in #31
Revert "Angular update" by @tsheils in #32
Angular update by @tsheils in #33
move db connection to plumber by @tsheils in #34
Convert project to monorepo, and other updates by @tsheils in #35
Development by @tsheils in #36
feat: add support for multiple env build by @mapleknight in #37
feat: install NCATS required packages to docker image by @mapleknight in #38
Development by @tsheils in #39
ui updates, and filter improvements by @tsheils in #40
split up query page by @tsheils in #41
fix install.r file by @tsheils in #42
Updated rFunctions.json to match documentation and vignette from RaMP-DB by @Mathelab in #43
Add tabs to analysis pages by @tsheils in #44
update nx, minor ui changes, finish chemical enrichment by @tsheils in #45
Development by @tsheils in #46
finish pipeline for pathway enrichment by @tsheils in #47
add footer, finish enrichment, add analytics by @tsheils in #48
fix pathway analysis issues, pagination, and add prerendering by @tsheils in #49
add api link by @tsheils in #50
add meta tags by @tsheils in #51
update home page by @tsheils in #52
fix home page, add filtering and download to chemical analysis and do… by @tsheils in #53
update plumber and menu options by @tsheils in #54
Development by @tsheils in #55
fix chemical class download by @tsheils in #56
Merge development branch to master for v1.0 by @tsheils in #57
Speed up file download and support background ids file by @tsheils in #58
pathway analysis updates by @tsheils in #59
update analysis to use background or biospecimen parameters by @tsheils in #60
fix chemical class when no data returned by @tsheils in #61
fix typo by @tsheils in #62
Andy plumber changes by @andyptt21 in #63
update about page and hide file upload for chemical classes by @tsheils in #64
minor UI updates by @tsheils in #65
about page fix by @tsheils in #66
merge dev into master by @tsheils in #67
fix figshare link by @tsheils in #68
Add internal swagger API documentation by @tsheils in #69
sync development and master by @tsheils in #70
Development by @tsheils in #71
Development - figshare dynamic url and angular 14 update by @tsheils in #72
update config variables by @tsheils in #73
update swagger doc by @tsheils in #74
fix: added required packages by @mapleknight in #75
Development by @tsheils in #76
change swagger url and db config params by @tsheils in #77
change another figshare url by @tsheils in #78
update readme by @tsheils in #79
update pathway enrichment tabs by @tsheils in #80
make changes based on manuscript feedback by @tsheils in #81
fix swagger url by @tsheils in #82
updates for publication, update version info by @tsheils in #86
merge Development by @tsheils in #87
library updates by @tsheils in #88
Development by @tsheils in #89
Merge pull request #89 from tsheils/development by @tsheils in #90
fix: add back runtime layer for UI image by @wangk8 in #91
Development by @tsheils in #92
Development by @tsheils in #93
Development by @tsheils in #94
Development by @tsheils in #96
update budgets by @tsheils in #98
Update example by @johnbraisted in #99
feat: add Jenkinsfile for rampdb-ui and rampdb-api by @bettyli037 in #101
feat: update 4 Jenkinsfile for RaMP DB API and UI by @bettyli037 in #103
feat: add o+r permission to assets/* by @bettyli037 in #105
v2.2.1 production release by @tsheils in #106