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@neuroinformatics-unit

SWC/GCNU Neuroinformatics Unit

Neuroscience & ML Research Software Engineering Group
README.md

Neuroinformatics Unit

The Neuroinformatics Unit (NIU) is a Research Software Engineering team based at the Sainsbury Wellcome Centre and the Gatsby Computational Neuroscience Unit.

The NIU is dedicated to the development of high quality, accurate, robust, easy to use and maintainable open-source software for neuroscience and machine learning. We collaborate with researchers and other software engineers to advance research in the two research centres and make new algorithms and tools available to the global community.

We also lead development of the BrainGlobe Initiative and contribute to various Sainsbury Wellcome Centre and other open-source tools.

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  1. movement movement Public

    Python tools for analysing body movements across space and time

    Python 113 10

  2. NeuroBlueprint NeuroBlueprint Public

    Lightweight data specification for systems neuroscience, inspired by BIDS.

    17 1

  3. datashuttle datashuttle Public

    Tool for the creation, validation and transfer of neuroscience project folders.

    Python 15 3

  4. python-cookiecutter python-cookiecutter Public

    Utility to create a basic Python project structure with tests, CI etc.

    Python 24 3

  5. fancylog fancylog Public

    Fancier logging with python.

    Python 12 4

  6. spikewrap spikewrap Public

    A tool to streamline extracellular electrophysiology analysis using SpikeInterface

    Python 13

Repositories

Showing 10 of 57 repositories
  • ethology Public

    Data processing tools for animal behavioural analysis

    neuroinformatics-unit/ethology’s past year of commit activity
    Python 8 BSD-3-Clause 0 17 5 Updated Jan 17, 2025
  • movement Public

    Python tools for analysing body movements across space and time

    neuroinformatics-unit/movement’s past year of commit activity
    Python 113 BSD-3-Clause 10 93 9 Updated Jan 16, 2025
  • spikewrap Public

    A tool to streamline extracellular electrophysiology analysis using SpikeInterface

    neuroinformatics-unit/spikewrap’s past year of commit activity
    Python 13 BSD-3-Clause 0 25 3 Updated Jan 13, 2025
  • poisson-numcodecs Public Forked from AllenNeuralDynamics/poisson-numcodecs

    Numcodecs implementation of photon conversion using poisson statistics

    neuroinformatics-unit/poisson-numcodecs’s past year of commit activity
    Python 0 MIT 7 0 0 Updated Jan 13, 2025
  • slides-qbatch-template-building Public

    Slides for NIU meeting about parallelising template building (and possibly other things)

    neuroinformatics-unit/slides-qbatch-template-building’s past year of commit activity
    SCSS 0 BSD-3-Clause 0 0 0 Updated Jan 7, 2025
  • fancylog Public

    Fancier logging with python.

    neuroinformatics-unit/fancylog’s past year of commit activity
    Python 12 BSD-3-Clause 4 5 0 Updated Jan 7, 2025
  • slurmio Public

    Python tools to read SLURM job parameters.

    neuroinformatics-unit/slurmio’s past year of commit activity
    Python 7 MIT 1 0 0 Updated Jan 7, 2025
  • python-cookiecutter Public

    Utility to create a basic Python project structure with tests, CI etc.

    neuroinformatics-unit/python-cookiecutter’s past year of commit activity
    Python 24 BSD-3-Clause 3 14 0 Updated Jan 6, 2025
  • swc-slack Public

    Tools to interface with slack

    neuroinformatics-unit/swc-slack’s past year of commit activity
    Python 7 BSD-3-Clause 1 0 0 Updated Jan 6, 2025
  • datashuttle Public

    Tool for the creation, validation and transfer of neuroscience project folders.

    neuroinformatics-unit/datashuttle’s past year of commit activity
    Python 15 BSD-3-Clause 3 50 3 Updated Jan 6, 2025
View all repositories

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