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Nextstrain

Real-time tracking of pathogen evolution

167 followers
https://nextstrain.org
@nextstrain
@nextstrain@mstdn.science

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ncov ncov Public

Nextstrain build for novel coronavirus SARS-CoV-2

Python 1.4k 403
augur augur Public

Pipeline components for real-time phylodynamic analysis

Python 268 128
auspice auspice Public

Web app for visualizing pathogen evolution

JavaScript 292 161

Repositories

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Showing 10 of 92 repositories

avian-flu Public
Nextstrain build for avian influenza viruses

nextstrain/avian-flu’s past year of commit activity

Python 20 7 11 4 Updated Nov 20, 2024
augur Public
Pipeline components for real-time phylodynamic analysis

nextstrain/augur’s past year of commit activity

Python 268 AGPL-3.0 128 241 (1 issue needs help) 54 Updated Nov 20, 2024
WNV Public
the repository used to build West Nile Virus for nextstrain

nextstrain/WNV’s past year of commit activity

Python 2 0 8 0 Updated Nov 20, 2024
mpox Public
Nextstrain build for mpox virus

nextstrain/mpox’s past year of commit activity

Python 45 MIT 19 26 10 Updated Nov 20, 2024
nextstrain.org Public
The Nextstrain website

nextstrain/nextstrain.org’s past year of commit activity

JavaScript 89 AGPL-3.0 48 83 (1 issue needs help) 13 Updated Nov 20, 2024
seasonal-flu Public
Scripts. config, and snakefiles for seasonal-flu nextstrain builds

nextstrain/seasonal-flu’s past year of commit activity

Python 45 26 27 2 Updated Nov 20, 2024
nextclade Public
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

nextstrain/nextclade’s past year of commit activity

Rust 219 MIT 61 110 (32 issues need help) 19 Updated Nov 20, 2024
auspice Public
Web app for visualizing pathogen evolution

nextstrain/auspice’s past year of commit activity

JavaScript 292 AGPL-3.0 161 238 (4 issues need help) 54 Updated Nov 20, 2024
pathogen-repo-guide Public template

nextstrain/pathogen-repo-guide’s past year of commit activity

Python 4 1 18 0 Updated Nov 19, 2024
ncov Public
Nextstrain build for novel coronavirus SARS-CoV-2

nextstrain/ncov’s past year of commit activity

Python 1,351 MIT 403 70 22 Updated Nov 19, 2024

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Python JavaScript Shell C TypeScript

Most used topics

nextstrain pathogen sars-cov-2 clades ncov

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