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Update multiqc config to support new modules
good first issue
Good for newcomers
#739
opened Dec 22, 2024 by
jfy133
For unbinned contigs, run CAT in "contig mode" (CAT_pack contigs) instead of "bin mode" (CAT_pack bins)
enhancement
New feature or request
#735
opened Dec 17, 2024 by
amizeranschi
Consider using Taxometer (From VAMB) for taxonomic classification of metagenomic contigs
enhancement
New feature or request
#722
opened Dec 3, 2024 by
jfy133
MetaEuk doesn't work with databases created using the commands metaeuk createdb or mmseqs createdb
bug
Something isn't working
#721
opened Dec 2, 2024 by
amizeranschi
Metaspades terminated with an error exit status (21)
bug
Something isn't working
#719
opened Nov 29, 2024 by
ycuesta
undefined parameter Something isn't working
host_genomes
with -r 3.2.0 and -r 3.2.1
bug
#715
opened Nov 22, 2024 by
Thomieh73
Be able to run multiple bin QC metrics
enhancement
New feature or request
#713
opened Nov 7, 2024 by
harper357
--host_fasta_bowtie2index path taken for bowtie -S output file
bug
Something isn't working
#694
opened Oct 16, 2024 by
MeriamOs
Optional skipping of short-read input to Filtlong for large datasets
enhancement
New feature or request
#691
opened Oct 14, 2024 by
ddomman
Create a samplesheet for funcscan
enhancement
New feature or request
#686
opened Oct 10, 2024 by
jasmezz
Consider metaMDBG as another long-read assembler
enhancement
New feature or request
#662
opened Sep 5, 2024 by
jfy133
Add nanoq as alternative for long-read filtering
enhancement
New feature or request
#661
opened Sep 5, 2024 by
jfy133
Add (meta)Flye for long-read only assembly
enhancement
New feature or request
#659
opened Sep 5, 2024 by
jfy133
Consider CarpeDeam for (ancient DNA) damage aware assembler
enhancement
New feature or request
#650
opened Aug 12, 2024 by
jfy133
Enter at postbinning stage
enhancement
New feature or request
#623
opened Jun 3, 2024 by
prototaxites
Allow Prodigal to create a gbk file instead of the gff
enhancement
New feature or request
#622
opened Jun 3, 2024 by
amizeranschi
CAT_DB process has harcoded CAT subdirectory names
bug
Something isn't working
#611
opened Apr 18, 2024 by
maxibor
Genome taxnomic classification with Sourmash
enhancement
New feature or request
#609
opened Apr 5, 2024 by
prototaxites
Improve documentation on the effects of completeness/contamination filters
enhancement
New feature or request
#606
opened Mar 22, 2024 by
jfy133
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