Merge pull request #57 from jmuhlich/no-publish-versions-yml

Avoid publishing versions.yml with module outputs
nf-core · Aug 19, 2024 · 8d1fdd0 · 8d1fdd0
2 parents 3d99268 + b33cd40
commit 8d1fdd0
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/conf/modules.config b/conf/modules.config
@@ -41,6 +41,7 @@ process {
         publishDir = [
             path: { "${params.outdir}/registration/ashlar" },
             mode: params.publish_dir_mode,
+            saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
         ]
     }
 
@@ -51,6 +52,7 @@ process {
         publishDir = [
             path: { "${params.outdir}/segmentation/deepcell_mesmer" },
             mode: params.publish_dir_mode,
+            saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
         ]
     }
 
@@ -59,13 +61,15 @@ process {
         publishDir = [
             path: { "${params.outdir}/segmentation/cellpose" },
             mode: params.publish_dir_mode,
+            saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
         ]
     }
 
     withName: MCQUANT {
         publishDir = [
             path: { "${params.outdir}/quantification/mcquant/${meta2.segmenter}" },
             mode: params.publish_dir_mode,
+            saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
         ]
     }
 
@@ -74,6 +78,7 @@ process {
         publishDir = [
             path: { "${params.outdir}/tma_dearray" },
             mode: params.publish_dir_mode,
+            saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
         ]
 
     }