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added Coreograph #49

Merged
merged 17 commits into from
Aug 12, 2024
Merged

added Coreograph #49

merged 17 commits into from
Aug 12, 2024

Commits on Jul 11, 2024

  1. basic idea seems to be working; needs testing and clean-up

    @RobJY
    RobJY committed Jul 11, 2024
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Commits on Jul 12, 2024

  1. added coreograph test

    @RobJY
    RobJY committed Jul 12, 2024
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Commits on Jul 16, 2024

  1. removed conditional run of mcquant as suggeted in Slack

    @RobJY
    RobJY committed Jul 16, 2024
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  2. changed coreograph input parameter to tma_dearray as suggested

    @RobJY
    RobJY committed Jul 16, 2024
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  3. fixed a couple of coreograph references that I had missed

    @RobJY
    RobJY committed Jul 16, 2024
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Commits on Jul 19, 2024

  1. merged in updated dev; looks good, but needs more testing

    @RobJY
    RobJY committed Jul 19, 2024
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Commits on Jul 22, 2024

  1. changed coreograph test to use input file from test data repo

    @RobJY
    RobJY committed Jul 22, 2024
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  2. added missing coreograph module; thanks Jeremy!

    @RobJY
    RobJY committed Jul 22, 2024
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Commits on Aug 1, 2024

  1. removed marker and sample sheets used for local testing

    @RobJY
    RobJY committed Aug 1, 2024
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  2. fixed tma_dearray description with suggestion from PR

    @RobJY
    RobJY committed Aug 1, 2024
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  3. cleaned up coreograph map with suggestion from PR

    @RobJY
    RobJY committed Aug 1, 2024
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  4. added parameter pixel_size to compute downsampleFactor

    @RobJY
    RobJY committed Aug 1, 2024
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  5. changed coreograph test of mcquant output to summarizeCsv as suggeste… 

    …d in PR
    @RobJY
    RobJY committed Aug 1, 2024
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  6. added default pixel_size to config

    @RobJY
    RobJY committed Aug 1, 2024
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Commits on Aug 2, 2024

  1. updated validation and schema text as suggested in PR

    @RobJY
    RobJY committed Aug 2, 2024
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Commits on Aug 5, 2024

  1. added validation test as suggested in PR

    @RobJY
    RobJY committed Aug 5, 2024
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  2. moved coreograph output to outdir/tma_dearray as suggested in PR

    @RobJY
    RobJY committed Aug 5, 2024
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