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nf-core/nanoseq v2.0.0 - Nickel Sloth
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@yuukiiwa yuukiiwa released this 26 Nov 15:53
· 290 commits to master since this release
2.0.0
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Learn about vigilant mode.

[2.0.0] - 2021-11-26

Major enhancements

  • Pipeline has been re-implemented in Nextflow DSL2
  • Software containers are now obtained from Biocontainers
  • Update pipeline template to nf-core/tools 2.1
  • #77 - Skipped alignment steps
  • #97 - Add optional DNA cleaning option

Parameters

  • Added --run_nanolyse to run NanoLyse for DNA cleaning of FastQ files
  • Added --nanolyse_fasta to provide a fasta file for nanolyse to filter against

Software dependencies

Dependency Old version New version
bioconductor-bambu 1.0.0 1.0.2
nanolyse 1.2.0
r-base 4.0.3 4.0.2

NB: Dependency has been updated if both old and new version information is present.
NB: Dependency has been added if just the new version information is present.
NB: Dependency has been removed if version information isn't present.

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