Merge pull request #59 from nf-core/fix-markdups-version

Use correct MarkDups version in Conda env and documentation URL
nf-core · Jun 13, 2024 · b235996 · b235996
2 parents 66ce9be + 3a701ec
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diff --git a/docs/usage.md b/docs/usage.md
@@ -80,7 +80,7 @@ P1__wgts,P1,SC,tumor,rna,fastq,library_id:SC_library;lane:001,/path/to/P1.SC.tum
 
 Inputs with the `bam` filetype will be processed by MarkDups as required by hmftools. Where an input BAM has already
 been processed specifically by [HMF
-MarkDups](https://github.com/hartwigmedical/hmftools/blob/mark-dups-v1.1.5/mark-dups/README.md), you can avoid needless
+MarkDups](https://github.com/hartwigmedical/hmftools/blob/mark-dups-v1.1.7/mark-dups/README.md), you can avoid needless
 reprocessing by setting `bam_markdups` as the filetype instead. It is important to understand that duplicate marking by
 other tools (e.g. GATK) cannot be used as a substitute since HMF MarkDups performs key operations beyond just duplicate
 marking.

diff --git a/modules/local/markdups/environment.yml b/modules/local/markdups/environment.yml
@@ -4,4 +4,4 @@ channels:
   - bioconda
   - defaults
 dependencies:
-  - bioconda::hmftools-mark-dups=1.1.5=hdfd78af_1
+  - bioconda::hmftools-mark-dups=1.1.7