Merge pull request #172 from JoseEspinosa/patch

Patch release 1.1.1
nf-core · Jul 30, 2024 · 9bea0dc · 9bea0dc
2 parents d75ade1 + 117257c
commit 9bea0dc
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,6 +3,12 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [[1.1.1](https://github.com/nf-core/proteinfold/releases/tag/1.1.1)] - 2025-07-30
+
+- Minor patch release to fix multiqc report.
+
+### Enhancements & fixes
+
 ## [[1.1.0](https://github.com/nf-core/proteinfold/releases/tag/1.1.0)] - 2025-06-25
 
 ### Credits
@@ -20,6 +26,8 @@ Special thanks to the following for their contributions to the release:
 
 Thank you to everyone else that has contributed by reporting bugs, enhancements or in any other way, shape or form.
 
+## [[1.1.0](https://github.com/nf-core/proteinfold/releases/tag/1.1.0)] - 2025-06-21
+
 ### Enhancements & fixes
 
 - [[#80](https://github.com/nf-core/proteinfold/pull/80)] - Add `accelerator` directive to GPU processes when `params.use_gpu` is true.

diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml
@@ -1,7 +1,7 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/nf-core/proteinfold/releases/tag/1.1.0" target="_blank">nf-core/proteinfold</a>
+  This report has been generated by the <a href="https://github.com/nf-core/proteinfold/releases/tag/1.1.1" target="_blank">nf-core/proteinfold</a>
   analysis pipeline. For information about how to interpret these results, please see the
-  <a href="https://nf-co.re/proteinfold/1.1.0/docs/output" target="_blank">documentation</a>.
+  <a href="https://nf-co.re/proteinfold/1.1.1/docs/output" target="_blank">documentation</a>.
 report_section_order:
   "nf-core-proteinfold-methods-description":
     order: -1000

diff --git a/modules.json b/modules.json
@@ -29,7 +29,8 @@
                     "multiqc": {
                         "branch": "master",
                         "git_sha": "b7ebe95761cd389603f9cc0e0dc384c0f663815a",
-                        "installed_by": ["modules"]
+                        "installed_by": ["modules"],
+                        "patch": "modules/nf-core/multiqc/multiqc.diff"
                     },
                     "untar": {
                         "branch": "master",

diff --git a/modules/local/colabfold_batch.nf b/modules/local/colabfold_batch.nf
@@ -7,7 +7,7 @@ process COLABFOLD_BATCH {
         error("Local COLABFOLD_BATCH module does not support Conda. Please use Docker / Singularity / Podman instead.")
     }
 
-    container "nf-core/proteinfold_colabfold:1.1.0"
+    container "nf-core/proteinfold_colabfold:1.1.1"
 
     input:
     tuple val(meta), path(fasta)

diff --git a/modules/local/mmseqs_colabfoldsearch.nf b/modules/local/mmseqs_colabfoldsearch.nf
@@ -7,7 +7,7 @@ process MMSEQS_COLABFOLDSEARCH {
         error("Local MMSEQS_COLABFOLDSEARCH module does not support Conda. Please use Docker / Singularity / Podman instead.")
     }
 
-    container "nf-core/proteinfold_colabfold:1.1.0"
+    container "nf-core/proteinfold_colabfold:1.1.1"
 
     input:
     tuple val(meta), path(fasta)

diff --git a/modules/local/run_alphafold2.nf b/modules/local/run_alphafold2.nf
@@ -10,7 +10,7 @@ process RUN_ALPHAFOLD2 {
         error("Local RUN_ALPHAFOLD2 module does not support Conda. Please use Docker / Singularity / Podman instead.")
     }
 
-    container "nf-core/proteinfold_alphafold2_standard:1.1.0"
+    container "nf-core/proteinfold_alphafold2_standard:1.1.1"
 
     input:
     tuple val(meta), path(fasta)

diff --git a/modules/local/run_alphafold2_msa.nf b/modules/local/run_alphafold2_msa.nf
@@ -10,7 +10,7 @@ process RUN_ALPHAFOLD2_MSA {
         error("Local RUN_ALPHAFOLD2_MSA module does not support Conda. Please use Docker / Singularity / Podman instead.")
     }
 
-    container "nf-core/proteinfold_alphafold2_msa:1.1.0"
+    container "nf-core/proteinfold_alphafold2_msa:1.1.1"
 
     input:
     tuple val(meta), path(fasta)

diff --git a/modules/local/run_alphafold2_pred.nf b/modules/local/run_alphafold2_pred.nf
@@ -10,7 +10,7 @@ process RUN_ALPHAFOLD2_PRED {
         error("Local RUN_ALPHAFOLD2_PRED module does not support Conda. Please use Docker / Singularity / Podman instead.")
     }
 
-    container "nf-core/proteinfold_alphafold2_split:1.1.0"
+    container "nf-core/proteinfold_alphafold2_split:1.1.1"
 
     input:
     tuple val(meta), path(fasta)

diff --git a/modules/local/run_esmfold.nf b/modules/local/run_esmfold.nf
@@ -6,7 +6,7 @@ process RUN_ESMFOLD {
         error("Local RUN_ESMFOLD module does not support Conda. Please use Docker / Singularity / Podman instead.")
     }
 
-    container "nf-core/proteinfold_esmfold:1.1.0"
+    container "nf-core/proteinfold_esmfold:1.1.1"
 
     input:
     tuple val(meta), path(fasta)

diff --git a/modules/nf-core/multiqc/main.nf b/modules/nf-core/multiqc/main.nf
diff --git a/modules/nf-core/multiqc/multiqc.diff b/modules/nf-core/multiqc/multiqc.diff
diff --git a/nextflow.config b/nextflow.config
@@ -322,7 +322,7 @@ manifest {
     description     = """Protein 3D structure prediction pipeline"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version         = '1.1.0'
+    version         = '1.1.1'
     doi             = '10.5281/zenodo.7629996'
 }