2.3.0

Added

• Shell specification to bash
• COSMIC password put into quotes
• Trimmed reads QC in MultiQC
• Add ARRIBA_VISUALISATION to processed affected by --skip_vis
• Option fusionreport_filter to in/activate fusionreport displaying of fusions detected by 2 or more tools

Changed

• Arriba visualisation now runs for FusionInspector (combined tools) results, not only Arriba results
• Updated metro map with trimming options and placed Arriba visualisation after FusionInspector
• Exit with error when using squid in combination with any ensembl version different from 102

Fixed

• Channel issue with indexing of files with using --cram squid
• Arriba references published in the correct folder