Keeping track of fMRIPrep. #192

GalKepler · 2022-05-02T09:35:12Z

This PR includes the following:

Basic workflow's infrastructure now resembles the one initiated in fmriprep.
Configurations added to fmriprep are now available in dmriprep's configuration
Tests' configurations were updated accordingly.
To make sure none of the changes made broke the workflow's structure built for the test's participant, I've built the workflow using the modified configuration file and received a valid-looking graph.

Resolves #191,

…urrently applicable for dmriprep

…he new configurations (from fmriprep)

…figurations' descriptions

pep8speaks · 2022-05-02T09:35:20Z

Hello @GalBenZvi, Thank you for updating!

Cheers! There are no style issues detected in this Pull Request. 🍻 To test for issues locally, pip install flake8 and then run flake8 dmriprep.

Fmriprep update

GalKepler added 12 commits May 1, 2022 12:19

DWI reporting

3809b62

added reports from fmriprep

33f9569

added tests from fmriprep

00b6349

collect_data now accepts bids filters

6173382

added several utils found in fmriprep, though I'm nut sure they are c…

62a724a

…urrently applicable for dmriprep

added testing utilities

7fae87a

sorting imports to match the fmriprep's structure

82126af

started updating the main part 'base'

bc3c586

rebuilt BidsDataGrabber - should consider making a PR to niworkflows

c4881c8

added fmriprep-like CLI parser, updated tests' config file to match t…

631f07d

…he new configurations (from fmriprep)

changed configuration directory stucture - config.py now hold all con…

6f1d3c2

…figurations' descriptions

fixed docs problems

4a4d40f

GalKepler and others added 3 commits May 2, 2022 12:36

Merge pull request #1 from GalBenZvi/fmriprep_update

2005b88

Fmriprep update

fixed flake8 issues

7a29551

fixed flake8 issues

cbf0271

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