Tox #20
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| name: Tox | |
| on: | |
| push: | |
| branches: [ master, main, 'maint/*' ] | |
| tags: [ '*' ] | |
| pull_request: | |
| branches: [ master, main, 'maint/*' ] | |
| schedule: | |
| - cron: '0 0 * * *' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| permissions: | |
| contents: read | |
| env: | |
| # Force tox and pytest to use color | |
| FORCE_COLOR: true | |
| TEST_DATA_HOME: /home/runner/testdata/nitransforms-tests | |
| jobs: | |
| cache-test-data: | |
| if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
| runs-on: ubuntu-latest | |
| outputs: | |
| SHA: ${{ steps.test-head.outputs.SHA }} | |
| steps: | |
| - name: Install the latest version of uv | |
| uses: astral-sh/setup-uv@v3 | |
| - name: Git settings (pacify DataLad) | |
| run: | | |
| git config --global user.name 'NiPreps Bot' | |
| git config --global user.email 'nipreps@gmail.com' | |
| - name: Install DataLad | |
| run: | | |
| $CONDA/bin/conda install -c conda-forge git-annex | |
| uv tool install --with=datalad-next --with=datalad-osf datalad | |
| - name: Check remote HEAD | |
| id: test-head | |
| run: | | |
| git ls-remote https://gin.g-node.org/oesteban/nitransforms-tests \ | |
| | awk '/HEAD/{ print "SHA=" $1 }' >> $GITHUB_OUTPUT | |
| - uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.TEST_DATA_HOME }} | |
| key: data-cache-v2-${{ steps.test-head.outputs.SHA }} | |
| restore-keys: | | |
| data-cache-v2-${{ steps.test-head.outputs.SHA }} | |
| data-cache-v2 | |
| - name: Install test data | |
| run: | | |
| export PATH=$CONDA/bin:$PATH | |
| mkdir -p /home/runner/testdata | |
| datalad install -s https://gin.g-node.org/oesteban/nitransforms-tests $TEST_DATA_HOME | |
| datalad update --merge -d $TEST_DATA_HOME | |
| datalad get -J 2 -d $TEST_DATA_HOME | |
| test: | |
| runs-on: ubuntu-latest | |
| needs: [cache-test-data] | |
| strategy: | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"] | |
| dependencies: [latest, pre] | |
| include: | |
| - python-version: "3.9" | |
| dependencies: min | |
| exclude: | |
| # Do not test pre-releases for versions out of SPEC0 | |
| - python-version: "3.9" | |
| dependencies: pre | |
| - python-version: "3.10" | |
| dependencies: pre | |
| env: | |
| DEPENDS: ${{ matrix.dependencies }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| fetch-depth: 0 | |
| - name: Install the latest version of uv | |
| uses: astral-sh/setup-uv@v3 | |
| - uses: actions/cache/restore@v4 | |
| with: | |
| path: ${{ env.TEST_DATA_HOME }} | |
| key: data-cache-v2-${{ needs.cache-test-data.outputs.SHA }} | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Install tox | |
| run: | | |
| uv tool install tox --with=tox-uv --with=tox-gh-actions | |
| - name: Show tox config | |
| run: tox c | |
| - name: Run tox | |
| run: tox -v --exit-and-dump-after 1200 | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| file: coverage.xml | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| if: ${{ always() }} | |
| checks: | |
| runs-on: 'ubuntu-latest' | |
| continue-on-error: true | |
| strategy: | |
| matrix: | |
| check: ['style'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install the latest version of uv | |
| uses: astral-sh/setup-uv@v3 | |
| - name: Show tox config | |
| run: uvx tox c | |
| - name: Show tox config (this call) | |
| run: uvx tox c -e ${{ matrix.check }} | |
| - name: Run check | |
| run: uvx tox -e ${{ matrix.check }} |