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1. snakemake-workflow-qiime2 snakemake-workflow-qiime2 Public

   Snakemake pipeline for 16S, 18S and ITS metagenomics using qiime2

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2. snakemake-workflow-metatranscriptomics snakemake-workflow-metatranscriptomics Public

   A snakemake workflow for performing metatranscriptomics

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3. shotgun-metagomics-pipeline shotgun-metagomics-pipeline Public

   A snakemake pipeline for performing read and assembly based shotgun metagenomics from QC to statistical analysis and visualizations

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4. 16s_pathogen_analysis 16s_pathogen_analysis Public

   This repository contains files needed to run pathogen analysis using amplicon sequences and QIIME (OTU table, scripts and mapping file)

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5. python-cheatsheet python-cheatsheet Public

   Forked from gto76/python-cheatsheet

   Comprehensive Python Cheatsheet

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6. snakemake-Demultiplex-fastq snakemake-Demultiplex-fastq Public

   Given a set of index, fastq and sample to barcode file, generate a directory structure with each sample's forward and reverse reads contained in individual sample directories.

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