SSBD is a platform for sharing and reusing bioimaging data. This repository provides metadata templates for data registration, as well as the metadata model for the database system.
The current released version of the SSBD metadata is 2.
The latest version is under development.
Version directory:
A part of the metadata components are described by controlled vocabulary/ontology.
| controlled vocabulary/ontology | topic | v2 | latest |
|---|---|---|---|
| Gene Ontology (Biological Process) | Biological process | x | x |
| Gene Ontology (Cellular Component) | Cellular component | x | x |
| Gene Ontology (Molecular Function) | Molecular function | x | x |
| Cell Ontology | Cell | x | |
| Cell Line Ontology | Cell Line | x | x |
| Uberon multi-species anatomy ontology | Anatomy | x | |
| Biological Imaging Methods Ontology | Imaging | x | x |
| Chemical Entities of Biological Interest Ontology | Chemical compound | x | |
| NCBI organismal classification | Organisms | x | x |
| Ontology for Biomedical Investigation | Experimental conditions | x | |
| Experimental Factor Ontology | Experimental conditions | x | |
| Units of measurement ontology | Unit | x | |
| ENSEMBL gene | Gene | x | |
| Uniprot | Protein | x | |
| Medical Subject Headings (MeSH) | Controlled vocabulary | x | x |