INCATools

All

40 repositories

pandasaurus_cxg
Public
Ontology enrichment tool for CxG standard AnnData files
Jupyter Notebook
•
Apache License 2.0
•1•3•3•1•Updated Nov 26, 2024Nov 26, 2024
ontology-development-kit
Public
Bootstrap an OBO Library ontology
robot continuous-integration owl ontology travis obo protege monarchinitiative obofoundry
Jinja
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BSD 3-Clause "New" or "Revised" License
•53•228•120•4•Updated Nov 26, 2024Nov 26, 2024
kgcl-rdflib
Public
Tools for working with KGCL
diffs diff semantic-diff owl ontology kg obofoundry linkml ontology-change-language rdf
Python
•
MIT License
•7•15•15•3•Updated Nov 19, 2024Nov 19, 2024
kgcl
Public
Datamodel for KGCL (Knowledge Graph Change Language)
rdf semantic-web linkml ontology-diffs ontology-changes kgcl
Python
•
MIT License
•3•11•29•1•Updated Nov 15, 2024Nov 15, 2024
ubergraph
Public
Integrated OBO ontology store
obofoundry ncats-translator rdf owl knowledge-graph
Makefile
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BSD 3-Clause "New" or "Revised" License
•3•43•30•4•Updated Nov 5, 2024Nov 5, 2024
whelk
Public
Whelk is an OWL EL reasoner
Scala
•
BSD 3-Clause "New" or "Revised" License
•4•24•3•5•Updated Nov 1, 2024Nov 1, 2024
ontology-access-kit
Public
Ontology Access Kit: A python library and command line application for working with ontologies
python rdf semantic-web owl ontology apis geneontology monarchinitiative obofoundry ontology-api
Python
•
Apache License 2.0
•29•125•153•9•Updated Oct 22, 2024Oct 22, 2024
whelk-paper
Public
Code for Whelk performance analyses
Scala
•
MIT License
•0•1•0•0•Updated Oct 4, 2024Oct 4, 2024
ontobot-change-agent
Public
A GitHub bot for modifying ontology resources.
bot ontology change-language kgcl
Python
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MIT License
•1•9•25•0•Updated Sep 26, 2024Sep 26, 2024
relation-graph
Public
Materialize OWL existential relations
rdf owl ontology obofoundry
Scala
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MIT License
•4•15•8•12•Updated Sep 26, 2024Sep 26, 2024
semantic-sql
Public
SQL and SQLite builds of OWL ontologies
owl ontologies obofoundry linkml relation-graph oaklib sql sparql
Python
•
BSD 3-Clause "New" or "Revised" License
•3•40•10•3•Updated Aug 14, 2024Aug 14, 2024
boomer
Public
Bayesian OWL ontology merging
owl mondo boomer reasoning owl-ontology geneontology monarchinitiative obofoundry ontology-merging probabilistic-owl
Scala
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BSD 3-Clause "New" or "Revised" License
•2•28•26•14•Updated Aug 5, 2024Aug 5, 2024
dosdp-tools
Public
Utility for working with DOSDP design patterns and OWL ontologies
design-patterns owl odp monarchinitiative obofoundry ontology dosdp-pattern
Scala
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MIT License
•5•25•33•18•Updated Jul 22, 2024Jul 22, 2024
verificado
Public
Python
•
Apache License 2.0
•0•1•0•0•Updated Jun 12, 2024Jun 12, 2024
PandaSaurus
Public
Supporting simple queries over ontology annotations in dataframes, using UberGraph queries
Python
•
Apache License 2.0
•0•2•2•0•Updated Mar 6, 2024Mar 6, 2024
biosample-analysis
Public
analysis of biosamples in INSDC
Jupyter Notebook
•1•3•25•1•Updated Feb 13, 2024Feb 13, 2024
obographviz
Public
Customizable translation of OBO graphs to dot for visualization using graphviz and other tools
javascript node graph-visualization obofoundry obographs graphviz json
JavaScript
•6•24•9•3•Updated Sep 13, 2023Sep 13, 2023
whelk-rs
Public
Whelk is an OWL EL reasoner
rust semantic-web owl
Rust
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MIT License
•4•11•7•1•Updated Mar 16, 2023Mar 16, 2023
rdf-sql-bulkloader
Public
Python
•1•1•1•0•Updated Mar 2, 2023Mar 2, 2023
oakx-grape
Public
Experimental OAK plugin for Grape
Python
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BSD 3-Clause "New" or "Revised" License
•2•5•9•4•Updated Feb 10, 2023Feb 10, 2023
oakx-plugin-cookiecutter
Public
cookiecutter for OAK plugins
plugins cookiecutter oaklib
Python
•0•2•0•0•Updated Jan 11, 2023Jan 11, 2023
oakx-robot
Public
robot plugin for OAK
Python
•0•1•0•0•Updated Sep 29, 2022Sep 29, 2022
obo-shapes
Public
SHACL and ShEx shapes for validating OBO ontologies
Makefile
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BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Apr 12, 2022Apr 12, 2022
.github
Public
0•0•0•0•Updated Apr 8, 2022Apr 8, 2022
owl_patternizer
Public
generate DOSDP patterns from OWL ontologies
Prolog
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BSD 3-Clause "New" or "Revised" License
•2•2•0•0•Updated Feb 28, 2022Feb 28, 2022
dead_simple_owl_design_patterns
Public
A simple system for specifying OWL class design patterns for OBO-ish ontologies.
templates ontology odp obofoundry
Python
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GNU General Public License v3.0
•5•42•27•0•Updated Feb 25, 2022Feb 25, 2022
DataHarmonizer
Public
A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 sampling data.
JavaScript
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MIT License
•27•0•0•0•Updated Dec 9, 2021Dec 9, 2021
ontology-term-usage
Public
determines how an ontology term has been used
Python
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Creative Commons Zero v1.0 Universal
•0•4•2•0•Updated Dec 7, 2021Dec 7, 2021
table-editor
Public archive
Lightweight CSV/TSV editor that supports autocomplete and is guided by a DOSDP-aware YAML configuration.
monarchinitiative
JavaScript
•2•4•18•0•Updated Oct 15, 2021Oct 15, 2021
rdf_matcher
Public
swi rdf_matcher
Prolog
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BSD 3-Clause "New" or "Revised" License
•1•3•3•0•Updated Apr 26, 2021Apr 26, 2021