Repositories list

• article-addenda

  Public
  Addenda, errata, corrigenda, and appendixes for TBIC's publications

  covid-19

  HTML

  •0•0•0•0•Updated May 31, 2024May 31, 2024

• ots-deidentification

  Public
  Shell

  •0•0•0•0•Updated May 31, 2024May 31, 2024

• corpus-utils

  Public
  A suite of tools for working with corpora (collections of texts), including the ability to extract general descriptive stats, reshape lines, and convert between common formats.

  Python

  •1•3•0•0•Updated May 24, 2024May 24, 2024

• lexicon-tools

  Public
  natural-language-processingbiomedical-informaticsnlp-resources+ 2umls-metathesaurusumls-engines

  Python

  •0•3•0•0•Updated Jun 15, 2023Jun 15, 2023

• ots-ensemble-systems

  Public
  Off-the-Shelf Ensemble Systems

  nlpensemblesnlp-machine-learning+ 2ensemble-classifierclinical-nlp

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Aug 19, 2022Aug 19, 2022

• etude-engine

  Public
  ETUDE (Evaluation Tool for Unstructured Data and Extractions) is a Python-based tool that provides consistent evaluation options across a range of annotation schemata and corpus formats

  nlpmachine-learningbiomedical-informatics+ 3nlp-machine-learningevaluation-frameworkevaluation-engine

  Jupyter Notebook

  •

  Apache License 2.0

  •1•12•1•0•Updated Jul 22, 2022Jul 22, 2022

• decovri

  Public
  Data Extraction for COVID-19 Related Information: A natural language processing (NLP) application for unstructured clinical notes developed as part of our pandemic response efforts

  Java

  •

  Apache License 2.0

  •0•2•0•0•Updated May 11, 2022May 11, 2022

• ots-clinical-context-attributes

  Public
  Off-the-Shelf Tools for Training and Running Context Attribute Extraction on Unstructured Clinical Texts

  Java

  •0•0•0•0•Updated Oct 15, 2021Oct 15, 2021

• ots-clinical-sectionizer

  Public
  tools for off-the-shelf clinical note sectionizing

  Python

  •0•1•0•0•Updated Sep 30, 2021Sep 30, 2021

• etude-engine-configs

  Public
  Apache License 2.0

  •0•0•0•0•Updated Aug 25, 2021Aug 25, 2021

• pipeline-test-harness

  Public
  A collection of tools for evaluating the downstream impact of upstream (pre-processing) natural language processing (NLP) components

  Java

  •0•0•0•0•Updated Apr 14, 2021Apr 14, 2021

• 2010-i2b2-VA-Challenge-Corpus-Augmentations

  Public
  0•0•0•0•Updated Apr 9, 2021Apr 9, 2021

• annotation_schemas

  Public
  Centralized repository for annotations schemas used across our various Natural Language Processing (NLP) and extraction projects

  TeX

  •0•0•0•0•Updated Nov 29, 2018Nov 29, 2018

• ensemble

  Public
  Ensemble method framework

  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Apr 20, 2018Apr 20, 2018