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    650 repositories

    • Synapse-Repository-Services

      Public
      The Synapse Repository Services project is the home of the JSON REST web services for Synapse.
      Java
      •
      Apache License 2.0
      •53•36•0•5•Updated Oct 25, 2024Oct 25, 2024

    • genie-bpc-pipeline

      Public
      GENIE BPC pipeline scripts
      genie
      R
      •
      MIT License
      •1•2•0•4•Updated Oct 25, 2024Oct 25, 2024

    • schematic

      Public
      Package for biomedical data model and metadata ingress management
      schemabiomedical-informaticsdata-ingress
      Python
      •
      MIT License
      •25•22•192•12•Updated Oct 24, 2024Oct 24, 2024

    • data_curator

      Public
      Data and metadata ingress app
      R
      •
      Apache License 2.0
      •21•10•49•0•Updated Oct 24, 2024Oct 24, 2024

    • SynapseWebClient

      Public
      The web client of the Synapse REST service core
      JavaScript
      •
      Apache License 2.0
      •37•23•1•8•Updated Oct 24, 2024Oct 24, 2024

    • sage-monorepo

      Public
      Where OpenChallenges, Schematic, and other Sage open source apps are built
      angularopenapischematicmonorepofull-stackfairdeveloper-experiencenxagoraspecification-first
      TypeScript
      •
      Apache License 2.0
      •12•23•152•5•Updated Oct 24, 2024Oct 24, 2024

    • snowflake

      Public
      Snowflake Administration, Transformations, and Analytics
      snowflake
      Python
      •
      Apache License 2.0
      •4•4•0•3•Updated Oct 24, 2024Oct 24, 2024

    • core-models

      Public
      Sage repository for data models and core models work
      Python
      •1•0•3•0•Updated Oct 24, 2024Oct 24, 2024

    • synapse-web-monorepo

      Public
      Monorepo for Synapse Web projects
      TypeScript
      •23•4•3•36•Updated Oct 24, 2024Oct 24, 2024

    • data_curator-infra

      Public
      CDK-based template for deploying a containerized application to AWS
      Python
      •6•1•0•0•Updated Oct 24, 2024Oct 24, 2024

    • Synapse-Stack-Builder

      Public
      Project for building a complete Synapse Stack
      Java
      •
      Apache License 2.0
      •19•5•0•1•Updated Oct 24, 2024Oct 24, 2024

    • schematic-infra

      Public
      CDK-based template for deploying a containerized application to AWS
      Python
      •4•0•0•2•Updated Oct 24, 2024Oct 24, 2024

    • agora-data-tools

      Public
      A place for Agora's ETL and Data Testing
      Jupyter Notebook
      •
      Apache License 2.0
      •3•1•0•1•Updated Oct 24, 2024Oct 24, 2024

    • synapsePythonClient

      Public
      Programmatic interface to Synapse services for Python
      synapsepython
      Python
      •
      Apache License 2.0
      •68•67•3•3•Updated Oct 24, 2024Oct 24, 2024

    • recover

      Public
      A data pipeline for processing data from the RECOVER project.
      Python
      •
      Apache License 2.0
      •1•5•0•0•Updated Oct 23, 2024Oct 23, 2024

    • service-catalog-library

      Public
      Library of service catalog templates
      scipool
      Apache License 2.0
      •9•0•0•1•Updated Oct 22, 2024Oct 22, 2024

    • data_curator_config

      Public
      Project configurations for the Data Curator App
      18•2•0•0•Updated Oct 22, 2024Oct 22, 2024

    • synapse-docker-registry

      Public
      ECS deployment for the Synapse Docker registry
      Python
      •2•0•0•0•Updated Oct 22, 2024Oct 22, 2024

    • scicomp-provisioner

      Public
      An service to auto provision resources
      Jinja
      •
      Apache License 2.0
      •45•1•0•0•Updated Oct 22, 2024Oct 22, 2024

    • aws-infra

      Public
      Global Sage Bionetworks AWS Infrastructure
      scipool
      Jinja
      •
      Apache License 2.0
      •13•8•0•0•Updated Oct 22, 2024Oct 22, 2024

    • iAtlas-infra

      Public
      Shell
      •
      Apache License 2.0
      •5•2•0•1•Updated Oct 21, 2024Oct 21, 2024

    • Synapse-Migration-Utility

      Public
      Utility to migrate one Synapse stack to another
      Java
      •
      Apache License 2.0
      •4•0•0•0•Updated Oct 20, 2024Oct 20, 2024

    • BridgeServer2

      Public
      Bridge Server 2.0 running on Spring Boot
      Java
      •
      Other
      •22•5•0•1•Updated Oct 18, 2024Oct 18, 2024

    • genie-bpc-drug-off-label

      Public
      Repository for the code relating to off-label and off-guideline use of drugs in the BPC data.
      R
      •0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

    • modelad

      Public
      Data Wrangling for Model-AD Programs study Alzheimer's Disease (AD) and identify treatments using animal models.
      R
      •
      MIT License
      •0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

    • Sage-Governance-Documents

      Public
      Repository of Governance documents for systems like Synapse
      Apache License 2.0
      •1•0•0•0•Updated Oct 17, 2024Oct 17, 2024

    • genie-bpc-bladder-landscape-manu

      Public
      Analyses related to the GENIE BPC Bladder cohort. Intended for a landscape manuscript.
      R
      •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

    • schematic_db

      Public
      A python package that manages data backends for schematic
      Python
      •1•0•8•0•Updated Oct 12, 2024Oct 12, 2024

    • nbconvert-webapp

      Public
      Converts ipynb file into html. Packaged for Lambda deployment
      Python
      •2•0•0•0•Updated Oct 11, 2024Oct 11, 2024

    • Agora

      Public
      TypeScript
      •
      MIT License
      •12•7•0•12•Updated Oct 11, 2024Oct 11, 2024