Skip to content

@U-BDS UAB Biological Data Science Core

Change the repository type filter

All

    Repositories list

    15 repositories

    • scnanoseq

      Public
      Single-cell/nuclei pipeline for data derived from Oxford Nanopore
      single-celloxford-nanoporenf-core
      Nextflow
      •
      MIT License
      •6•0•0•0•Updated Dec 23, 2024Dec 23, 2024

    • training_guides

      Public
      Compilation of training guides
      dockerrstudiosingularitydata-analysisnf-core
      Shell
      •0•4•1•0•Updated Dec 20, 2024Dec 20, 2024

    • configs

      Public
      Config files used to define parameters specific to compute environments at different Institutions
      Nextflow
      •
      MIT License
      •277•0•0•0•Updated Nov 30, 2024Nov 30, 2024

    • bulk_RNA_seq_workshop

      Public
      Workshop materials for the U-BDS bulk RNA-seq lessons
      workshopbulk-rna-seq
      R
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jul 8, 2024Jul 8, 2024

    • 2024-07-09-uab

      Public
      0•0•0•0•Updated Jul 5, 2024Jul 5, 2024

    • .github

      Public
      The UAB Biological Data Science Core (U-BDS) is a UAB institutional resource which aims provide services, foster long-term collaborations with the UAB research community, and provide training for biomedical investigators on a specific set of analysis tools and techniques.
      1•0•0•0•Updated Apr 29, 2024Apr 29, 2024

    • 2024-03-18-uab

      Public template
      workshop
      HTML
      •
      Other
      •523•0•0•0•Updated Mar 14, 2024Mar 14, 2024

    • git-novice

      Public
      Version Control with Git
      workshop
      Other
      •927•0•0•0•Updated Feb 5, 2024Feb 5, 2024

    • test-datasets

      Public
      Test data to be used for automated testing with the nf-core pipelines
      nf-core
      MIT License
      •361•0•0•0•Updated Jan 11, 2024Jan 11, 2024

    • 2023-12-14-uab

      Public
      A repository hosting the website for UAB's Fall 2023 Software Carpentry Workshop.
      rworkshopswcsoftware-carpentryuabubds
      HTML
      •
      Other
      •0•1•1•0•Updated Dec 15, 2023Dec 15, 2023

    • zebrafish_telencephalon_atlas

      Public
      A R Shiny app of the transcriptome atlas of the maturing zebrafish telencephalon
      rshiny
      R
      •
      MIT License
      •0•0•0•0•Updated Jul 26, 2023Jul 26, 2023

    • GbmPdxSTR

      Public
      Source code for the GbmPdxSTR app available at gliomamodels.com
      rshiny
      R
      •
      Other
      •0•0•0•0•Updated Mar 27, 2023Mar 27, 2023

    • containers

      Public
      Bioinformatics containers
      Dockerfile
      •
      Apache License 2.0
      •249•0•0•0•Updated Feb 24, 2023Feb 24, 2023

    • multi-package-containers

      Public
      Testing building mulled containers for multi-requirement tools.
      224•0•0•0•Updated Feb 22, 2023Feb 22, 2023

    • mulled

      Public
      Mulled - Automatized Containerized Software Repository
      37•0•0•0•Updated Feb 10, 2023Feb 10, 2023