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    • The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge
      Jupyter Notebook
      MIT License
      06171Updated Dec 22, 2024Dec 22, 2024
    • JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library
      Python
      Apache License 2.0
      38460Updated Dec 22, 2024Dec 22, 2024
    • nemos

      Public
      NEural MOdelS, a statistical modeling framework for neuroscience.
      Python
      MIT License
      883992Updated Dec 20, 2024Dec 20, 2024
    • Run Stan models in the browser
      TypeScript
      Apache License 2.0
      138192Updated Dec 19, 2024Dec 19, 2024
    • spack

      Public
      A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
      Python
      Other
      2.3k2013Updated Dec 19, 2024Dec 19, 2024
    • neurosift

      Public
      Browser-based NWB visualization and DANDI exploration
      TypeScript
      Apache License 2.0
      647581Updated Dec 19, 2024Dec 19, 2024
    • adapol

      Public
      Adaptive Pole Fitting for Quantum Many-Body Physics
      Jupyter Notebook
      11100Updated Dec 17, 2024Dec 17, 2024
    • cryoSBI

      Public
      Python
      09140Updated Dec 16, 2024Dec 16, 2024
    • CaImAn

      Public
      Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
      Python
      GNU General Public License v2.0
      370645779Updated Dec 13, 2024Dec 13, 2024
    • cryosvd

      Public
      Jupyter Notebook
      GNU General Public License v3.0
      1400Updated Dec 12, 2024Dec 12, 2024
    • neuroRSE

      Public
      Website for CCN's neuroRSE group
      CSS
      MIT License
      0100Updated Dec 11, 2024Dec 11, 2024
    • Template repo to serve as recipient of jenkins documentation build pushes
      Python
      MIT License
      0000Updated Dec 11, 2024Dec 11, 2024
    • nixpack

      Public
      nix+spack = nixpack (spanix?)
      Nix
      MIT License
      43914Updated Dec 10, 2024Dec 10, 2024
    • BenchmarkToolkit is a Python library designed to simplify and streamline benchmarking tasks. This library provides a high-level abstraction over various benchmarking functions, allowing developers to easily perform performance testing and analysis with minimal setup.
      Python
      1000Updated Dec 10, 2024Dec 10, 2024
    • finufft

      Public
      Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3
      C++
      Other
      81307548Updated Dec 9, 2024Dec 9, 2024
    • CryoLike

      Public
      Python
      MIT License
      1620Updated Dec 7, 2024Dec 7, 2024
    • disBatch

      Public
      Dynamic dispatch of a list of command-line tasks, locally or on a cluster. Supports retrying failed tasks, and adding/removing compute resources on-the-fly.
      Python
      Apache License 2.0
      94370Updated Dec 5, 2024Dec 5, 2024
    • Python package for determination of conformational continua of macromolecules from single-particle cryo-EM data
      Python
      GNU General Public License v3.0
      1730Updated Dec 5, 2024Dec 5, 2024
    • nifty-ls

      Public
      A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!
      Python
      Apache License 2.0
      23440Updated Dec 2, 2024Dec 2, 2024
    • Tools for building a website featuring visualizations from polymathic/the_well
      Jupyter Notebook
      0000Updated Dec 2, 2024Dec 2, 2024
    • Pytorch wrappers for the FINUFFT library
      Python
      MIT License
      01251Updated Dec 2, 2024Dec 2, 2024
    • Postprocessing & analysis scripts for aLENS data
      Jupyter Notebook
      Other
      2000Updated Dec 2, 2024Dec 2, 2024
    • figurl

      Public
      Shareable, interactive scientific figures in the cloud
      Python
      Apache License 2.0
      43520Updated Nov 22, 2024Nov 22, 2024
    • sciware

      Public
      Learning materials for scientific software development
      HTML
      368120Updated Nov 21, 2024Nov 21, 2024
    • FMM3D

      Public
      Flatiron Institute Fast Multipole Libraries --- This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in three dimensions, on a multi-core shared-memory machine.
      Fortran
      Other
      40103210Updated Nov 21, 2024Nov 21, 2024
    • Python
      1042Updated Nov 15, 2024Nov 15, 2024
    • c2py

      Public
      Clair/c2py low level library
      C++
      Apache License 2.0
      1100Updated Nov 14, 2024Nov 14, 2024
    • clair

      Public
      Clair (Clang Introspection and Reflection) tools. A set of clang tools developed for Flatiron/CCQ
      C++
      Apache License 2.0
      21110Updated Nov 14, 2024Nov 14, 2024
    • flathub

      Public
      A simple elasticsearch frontend for serving astrophysical simulation catalog data
      Haskell
      Apache License 2.0
      610140Updated Nov 13, 2024Nov 13, 2024
    • Flatiron Institute MD Course
      Jupyter Notebook
      MIT License
      1700Updated Nov 13, 2024Nov 13, 2024