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@fls-bioinformatics-core Bioinformatics Core Facility in the Faculty of Biology Medicine and Health at the University of Manchester

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    20 repositories

    • Site2Target

      Public
      An R package to associate sets of sites/peaks to target genes
      R
      •0•0•0•0•Updated Dec 21, 2024Dec 21, 2024

    • auto_process_ngs

      Public
      Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.
      Python
      •
      Other
      •7•9•70•4•Updated Dec 16, 2024Dec 16, 2024

    • ngsarchiver

      Public
      Utility to archive and manage BCF NGS data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

    • genomics

      Public
      Scripts, utilities and programs for genomic bioinformatics.
      Python
      •
      Other
      •37•81•10•1•Updated Dec 6, 2024Dec 6, 2024

    • sc-gex

      Public
      BCF's single-cell GEX scripts
      single-cell-rna-seq
      R
      •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

    • RnaChipIntegrator

      Public
      RnaChipIntegrator is a utility that performs integrated analyses of 'gene' data (a set of genes or other genomic features) with 'peak' data (a set of regions, for example ChIP peaks) to identify the genes nearest to each peak, and vice versa
      Python
      •
      Artistic License 2.0
      •1•5•4•0•Updated Sep 4, 2024Sep 4, 2024

    • galaxy-tools

      Public
      FLS Galaxy tools and tool-wrappers for in-house and third-party bioinformatic applications.
      Shell
      •11•14•3•4•Updated Mar 20, 2024Mar 20, 2024

    • pegs

      Public
      PEGS: Peak-set Enrichment of Gene-Sets
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•1•0•Updated Dec 7, 2023Dec 7, 2023

    • NanoDam_analysis-sge

      Public
      R markdowns & scripts accompanying 'Tang, J et al., 2021, bioRxiv'.
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Nov 27, 2023Nov 27, 2023

    • fls-bioinformatics-core.github.io

      Public
      HTML
      •0•0•0•0•Updated Jan 26, 2022Jan 26, 2022

    • GFFUtils

      Public
      Python module and utility programs for working with GFF files
      Python
      •
      Other
      •3•32•7•1•Updated Nov 25, 2020Nov 25, 2020

    • SCRUM_single_cell_bioinformatics_workshop

      Public
      This is a workshop to show step-by-step workflow of Single cell RNA-seq analysis
      HTML
      •1•2•0•0•Updated Mar 3, 2020Mar 3, 2020

    • HTS_SOLiD_Preprocessing

      Public
      Archive of the SOLiD preprocessing scripts by Ariella Sasson & Todd Michael originally hosted at http://hts.rutgers.edu/filter
      Perl
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Oct 19, 2015Oct 19, 2015

    • proteomics-mascot-user-contact-verify

      Public
      Determines a valid list of users from Matrix Science's Mascot user.xml file, using an LDAP server
      Python
      •1•0•0•0•Updated Apr 23, 2013Apr 23, 2013

    • metagenomics

      Public
      Scripts and utilities for running metagenomic analyses
      Shell
      •3•6•0•0•Updated Feb 22, 2013Feb 22, 2013

    • bedUtils

      Public
      Some Python utilities for working with BED format files.
      Python
      •0•2•0•0•Updated Aug 10, 2012Aug 10, 2012

    • proteomics-python2.7-proteomics-lib

      Public
      A library supporting Proteomic data manipulation
      Python
      •
      Artistic License 2.0
      •3•2•0•0•Updated Feb 9, 2012Feb 9, 2012

    • fedora-rpms

      Public
      Spec files and resources for building Fedora RPMS
      2•1•0•0•Updated Feb 3, 2012Feb 3, 2012

    • proteomics-mascot_log_reader

      Public
      Software for interpreting Matrix Science Mascot log's
      Python
      •0•1•0•0•Updated Jan 23, 2012Jan 23, 2012

    • proteomics-perl5-proteomics-lib

      Public
      A library supporting Proteomic data manipulation
      Perl
      •0•1•0•0•Updated Jul 15, 2011Jul 15, 2011