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    88 repositories

    • dorado

      Public
      Oxford Nanopore's Basecaller
      nanoporegenomicslibtorchbasecalling
      C++
      •
      Other
      •59•494•115•2•Updated Oct 4, 2024Oct 4, 2024

    • modkit

      Public
      A bioinformatics tool for working with modified bases
      nanoporemethylationmodified-bases
      Rust
      •
      Other
      •7•137•89•0•Updated Sep 27, 2024Sep 27, 2024

    • read_until_api

      Public
      Read Until client library for Nanopore Sequencing
      Python
      •
      Other
      •12•102•0•0•Updated Sep 25, 2024Sep 25, 2024

    • remora

      Public
      Methylation/modified base calling separated from basecalling.
      nanoporemethylationbasecalling
      Python
      •
      Other
      •20•155•3•1•Updated Sep 17, 2024Sep 17, 2024

    • homebrew-tap

      Public
      Homebrew casks for applications from Oxford Nanopore Technologies PLC and Metrichor Ltd.
      nanoporecasksepi2mehomebrew
      Ruby
      •0•6•0•0•Updated Sep 16, 2024Sep 16, 2024

    • medaka

      Public
      Sequence correction provided by ONT Research
      nanoporemedaka
      Python
      •
      Other
      •74•411•11•0•Updated Sep 11, 2024Sep 11, 2024

    • pomoxis

      Public
      Analysis components from Oxford Nanopore Research
      Python
      •
      Other
      •23•94•10•1•Updated Sep 4, 2024Sep 4, 2024

    • hatch-protobuf

      Public
      Hatch plugin for generating Python files from Protocol Buffers .proto files
      Python
      •
      Other
      •0•4•1•1•Updated Aug 26, 2024Aug 26, 2024

    • pod5-file-format

      Public
      Pod5: a high performance file format for nanopore reads.
      nanoporefile-formatapache-arrow
      C++
      •
      Other
      •18•130•26•3•Updated Aug 9, 2024Aug 9, 2024

    • minknow_api

      Public
      Protobuf and gRPC specifications for the MinKNOW API
      Python
      •
      Other
      •12•55•27•1•Updated Jul 31, 2024Jul 31, 2024

    • bonito

      Public
      A PyTorch Basecaller for Oxford Nanopore Reads
      nanoporepytorchbasecalling
      Python
      •
      Other
      •120•389•92•2•Updated Jul 25, 2024Jul 25, 2024

    • rerio

      Public
      Research release basecalling models and configurations
      nanoporebasecalling
      Python
      •
      Other
      •9•102•1•1•Updated Jun 18, 2024Jun 18, 2024

    • sqlpad

      Public
      Web-based SQL editor run in your own private cloud. Supports MySQL, Postgres, SQL Server, Vertica, Crate, ClickHouse, Trino, Presto, SAP HANA, Cassandra, Snowflake, BigQuery, SQLite, and more with ODBC
      JavaScript
      •
      MIT License
      •781•0•0•0•Updated May 14, 2024May 14, 2024

    • fast-ctc-decode

      Public
      Blitzing Fast CTC Beam Search Decoder
      beam-searchviterbictc-decode
      Rust
      •
      MIT License
      •27•176•6•0•Updated May 13, 2024May 13, 2024

    • Clair3

      Public
      Clair3 - Integrating pileup and full-alignment for high-performance long-read variant calling
      Python
      •27•5•0•0•Updated Mar 25, 2024Mar 25, 2024

    • ont-minimap2

      Public
      Cross platform builds for minimap2
      CMake
      •1•5•0•0•Updated Mar 20, 2024Mar 20, 2024

    • DTR-phage-pipeline

      Public
      Python
      •
      Mozilla Public License 2.0
      •6•16•2•1•Updated Mar 11, 2024Mar 11, 2024

    • ont_fast5_api

      Public
      Oxford Nanopore Technologies fast5 API software
      Python
      •
      Other
      •28•146•13•0•Updated Feb 27, 2024Feb 27, 2024

    • pipeline-umi-amplicon

      Public
      Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
      Python
      •
      Other
      •11•28•15•3•Updated Feb 27, 2024Feb 27, 2024

    • linux-minit-nvidia

      Public
      ONT modified git://nv-tegra.nvidia.com/linux-nvidia.git.
      C
      •0•0•0•0•Updated Oct 12, 2023Oct 12, 2023

    • pyspoa

      Public
      Python bindings to spoa
      nanoporealignmentpoamultiple-sequence-alignment
      Python
      •
      Other
      •3•18•3•0•Updated Oct 4, 2023Oct 4, 2023

    • data-rambler

      Public
      An experimental language for a JSON query, transformation and streaming
      TypeScript
      •
      Mozilla Public License 2.0
      •0•2•6•0•Updated Jul 28, 2023Jul 28, 2023

    • u-boot

      Public
      C
      •1•0•0•0•Updated Jun 30, 2023Jun 30, 2023

    • linux4.9-minit

      Public
      ONT fork of Linux for NVIDIA Tegra based devices
      C
      •
      Other
      •1•0•0•0•Updated Jun 30, 2023Jun 30, 2023

    • kmer_models

      Public
      Predictive kmer models for development use
      Mozilla Public License 2.0
      •18•53•0•0•Updated Jun 6, 2023Jun 6, 2023

    • duplex-tools

      Public
      Splitting of sequence reads by internal adapter sequence search
      Python
      •
      Other
      •6•49•21•0•Updated May 30, 2023May 30, 2023

    • onesie

      Public
      A Linux device-driver for the MinION-mk1C
      C
      •
      GNU General Public License v2.0
      •0•1•0•0•Updated May 25, 2023May 25, 2023

    • megalodon

      Public
      Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.
      epigeneticsvariant-callingbasecallingguppy
      Python
      •
      Other
      •30•196•44•0•Updated May 4, 2023May 4, 2023

    • tombo

      Public
      Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
      epigenetics
      Python
      •
      Other
      •54•229•130•2•Updated May 4, 2023May 4, 2023

    • lc23-poster-avian-flu

      Public
      Apache License 2.0
      •0•0•0•0•Updated Apr 21, 2023Apr 21, 2023