Skip to content

owensgl/pop_gen

BranchesTags

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

34 Commits
ABBA_BABA_individual.pl
ABBA_BABA_individual.pl
 
 
AlleleCount2Fstdxy.pl
AlleleCount2Fstdxy.pl
 
 
AlleleCount2Fstdxy_MAFfilter.pl
AlleleCount2Fstdxy_MAFfilter.pl
 
 
Fst2geneslidingwindow.pl
Fst2geneslidingwindow.pl
 
 
MDS_ellipse.R
MDS_ellipse.R
 
 
MDS_pipe.R
MDS_pipe.R
 
 
MDS_pipe2.R
MDS_pipe2.R
 
 
NSNPtable2countbychr.pl
NSNPtable2countbychr.pl
 
 
PipeStructureSiteBySite.pl
PipeStructureSiteBySite.pl
 
 
PipeStructureSiteBySite_forparallel.pl
PipeStructureSiteBySite_forparallel.pl
 
 
Process_ind_abba.pl
Process_ind_abba.pl
 
 
README.md
README.md
 
 
SNPtable2BasicPopGenStats_v1.pl
SNPtable2BasicPopGenStats_v1.pl
 
 
SNPtable2Fst.pl
SNPtable2Fst.pl
 
 
SNPtable2FstDxy_GB_allVall_PopFile.pl
SNPtable2FstDxy_GB_allVall_PopFile.pl
 
 
SNPtable2Fstdxy.pl
SNPtable2Fstdxy.pl
 
 
SNPtable2Fstdxy_filtered.pl
SNPtable2Fstdxy_filtered.pl
 
 
SNPtable2Fstdxy_filtered_speedy.pl
SNPtable2Fstdxy_filtered_speedy.pl
 
 
SNPtable2Fstdxy_lessfiltered.pl
SNPtable2Fstdxy_lessfiltered.pl
 
 
SNPtable2IndPopStats.pl
SNPtable2IndPopStats.pl
 
 
SNPtable2NeiD.pl
SNPtable2NeiD.pl
 
 
SNPtable2alldistances.pl
SNPtable2alldistances.pl
 
 
SNPtable2alldistances_allsites.pl
SNPtable2alldistances_allsites.pl
 
 
SNPtable2checkPCintrogression.pl
SNPtable2checkPCintrogression.pl
 
 
SNPtable2classifyhyballeles.pl
SNPtable2classifyhyballeles.pl
 
 
SNPtable2comparefstpermute.pl
SNPtable2comparefstpermute.pl
 
 
SNPtable2countalldata.pl
SNPtable2countalldata.pl
 
 
SNPtable2countdata.pl
SNPtable2countdata.pl
 
 
SNPtable2distances_SW.pl
SNPtable2distances_SW.pl
 
 
SNPtable2fis.pl
SNPtable2fis.pl
 
 
SNPtable2hybdistance.pl
SNPtable2hybdistance.pl
 
 
SNPtable2hybdistance_byindividual.pl
SNPtable2hybdistance_byindividual.pl
 
 
SNPtable2hybdistance_old.pl
SNPtable2hybdistance_old.pl
 
 
SNPtable2hybdistance_v2.pl
SNPtable2hybdistance_v2.pl
 
 
SNPtable2hybsnptype.pl
SNPtable2hybsnptype.pl
 
 
SNPtable2hybtotaldist.pl
SNPtable2hybtotaldist.pl
 
 
SNPtable2interspecieshet.pl
SNPtable2interspecieshet.pl
 
 
SNPtable2outflank.pl
SNPtable2outflank.pl
 
 
SNPtable2pi.pl
SNPtable2pi.pl
 
 
SNPtable2pi_singlepop.pl
SNPtable2pi_singlepop.pl
 
 
SNPtable2uniqhybsnps.pl
SNPtable2uniqhybsnps.pl
 
 
SNPtable2uniquealleles.pl
SNPtable2uniquealleles.pl
 
 
SNPtable_addsamples.pl
SNPtable_addsamples.pl
 
 
SNPtype2slidingwindow.pl
SNPtype2slidingwindow.pl
 
 
SlidingWindow_hs.pl
SlidingWindow_hs.pl
 
 
SlidingWindow_onlyfst.pl
SlidingWindow_onlyfst.pl
 
 
SlidingWindow_v2.pl
SlidingWindow_v2.pl
 
 
SlidingWindow_v3.pl
SlidingWindow_v3.pl
 
 
SlidingWindow_v3_pi.pl
SlidingWindow_v3_pi.pl
 
 
SlidingWindow_v3_pi_2pops.pl
SlidingWindow_v3_pi_2pops.pl
 
 
SlidingWindow_v4_pi.pl
SlidingWindow_v4_pi.pl
 
 
SlidingWindow_v5.pl
SlidingWindow_v5.pl
 
 
check_bam.bash
check_bam.bash
 
 
count_outliers.pl
count_outliers.pl
 
 
countbadcolumns.pl
countbadcolumns.pl
 
 
csvr2combinerepulsion.pl
csvr2combinerepulsion.pl
 
 
csvr2impute.pl
csvr2impute.pl
 
 
fastas2dist.pl
fastas2dist.pl
 
 
fstcount2call.pl
fstcount2call.pl
 
 
fstcount2percent.pl
fstcount2percent.pl
 
 
gather_stats.bash
gather_stats.bash
 
 
gwas2gene.pl
gwas2gene.pl
 
 
hmp2CSS_sw.pl
hmp2CSS_sw.pl
 
 
hmp2CSS_sw_v2.pl
hmp2CSS_sw_v2.pl
 
 
hmp2CSS_sw_v2_singles.pl
hmp2CSS_sw_v2_singles.pl
 
 
hmp2hyblik.pl
hmp2hyblik.pl
 
 
hmp2hyblik_bycm.pl
hmp2hyblik_bycm.pl
 
 
hmp2hyblik_bygene.pl
hmp2hyblik_bygene.pl
 
 
hmp2hyblik_v2.pl
hmp2hyblik_v2.pl
 
 
hmp2parentfreqs.pl
hmp2parentfreqs.pl
 
 
hybcurve_discretesummarizer_bywindow_nocm.pl
hybcurve_discretesummarizer_bywindow_nocm.pl
 
 
hybcurve_summarizer_bygene.pl
hybcurve_summarizer_bygene.pl
 
 
hybcurve_summarizer_bywindow.pl
hybcurve_summarizer_bywindow.pl
 
 
hybcurve_summarizer_bywindow_nocm.pl
hybcurve_summarizer_bywindow_nocm.pl
 
 
hybformat2allcor.pl
hybformat2allcor.pl
 
 
hybformat2baselinecor.pl
hybformat2baselinecor.pl
 
 
jackknife_neiD.pl
jackknife_neiD.pl
 
 
make_artificial_hybrids.pl
make_artificial_hybrids.pl
 
 
measure_accuracy.pl
measure_accuracy.pl
 
 
pSNPtable2likelihoodcluster.pl
pSNPtable2likelihoodcluster.pl
 
 
pSNPtable2likelihoodcurves.pl
pSNPtable2likelihoodcurves.pl
 
 
pSNPtable2siteparentage.pl
pSNPtable2siteparentage.pl
 
 
pangenome_counts2groupfreq.pl
pangenome_counts2groupfreq.pl
 
 
parentagecount2slidingwindow.pl
parentagecount2slidingwindow.pl
 
 
prepforfixeddif2geneparentage.pl
prepforfixeddif2geneparentage.pl
 
 
prepforfixeddif2junctioncount.pl
prepforfixeddif2junctioncount.pl
 
 
prepforfixeddif2junctiondistance.pl
prepforfixeddif2junctiondistance.pl
 
 
prepforfixeddif2randomjunctioncount.pl
prepforfixeddif2randomjunctioncount.pl
 
 
prepforfixeddif2simulatedexpjunctions.pl
prepforfixeddif2simulatedexpjunctions.pl
 
 
prepforfixeddif2simulatedjunctions.pl
prepforfixeddif2simulatedjunctions.pl
 
 
prepforfixeddif2windowedjunctions.pl
prepforfixeddif2windowedjunctions.pl
 
 
prepforvit2fixedallelecount.pl
prepforvit2fixedallelecount.pl
 
 
process_structure_ss.pl
process_structure_ss.pl
 
 
r2_summarizer.pl
r2_summarizer.pl
 
 
run_vcf2inversionfst.pl
run_vcf2inversionfst.pl
 
 
sliding_window_het.pl
sliding_window_het.pl
 
 
snptable2alelle_freq.pl
snptable2alelle_freq.pl
 
 
sync2dxy.pl
sync2dxy.pl
 
 
tmp.pl
tmp.pl
 
 
vcf2countperpop.pl
vcf2countperpop.pl
 
 

Repository files navigation

pop_gen

Population genetic scripts by Gregory Owens. University of British Columbia

About

Population genetic scripts

Resources

Readme
Activity

Stars

7 stars

Watchers

2 watching

Forks

2 forks
Report repository

Releases

No releases published

Packages

No packages published

Languages