Merge branch 'main' into fix-merge-attrs

pandas-dev · Dec 20, 2024 · 2db541a · 2db541a
2 parents 7815e73 + 602ae10
commit 2db541a
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Showing 175 changed files with 1,989 additions and 1,429 deletions.
diff --git a/.circleci/config.yml b/.circleci/config.yml
@@ -34,7 +34,6 @@ jobs:
             fi
             python -m pip install --no-build-isolation -ve . -Csetup-args="--werror"
             PATH=$HOME/miniconda3/envs/pandas-dev/bin:$HOME/miniconda3/condabin:$PATH
-            sudo apt-get update && sudo apt-get install -y libegl1 libopengl0
             ci/run_tests.sh
   test-linux-musl:
     docker:

diff --git a/.github/workflows/unit-tests.yml b/.github/workflows/unit-tests.yml
@@ -385,10 +385,12 @@ jobs:
           nogil: true
 
       - name: Build Environment
+        # TODO: Once numpy 2.2.1 is out, don't install nightly version
+        # Tests segfault with numpy 2.2.0: https://github.com/numpy/numpy/pull/27955
         run: |
           python --version
-          python -m pip install --upgrade pip setuptools wheel numpy meson[ninja]==1.2.1 meson-python==0.13.1
-          python -m pip install --pre --extra-index-url https://pypi.anaconda.org/scientific-python-nightly-wheels/simple cython
+          python -m pip install --upgrade pip setuptools wheel meson[ninja]==1.2.1 meson-python==0.13.1
+          python -m pip install --pre --extra-index-url https://pypi.anaconda.org/scientific-python-nightly-wheels/simple cython numpy
           python -m pip install versioneer[toml]
           python -m pip install python-dateutil pytz tzdata hypothesis>=6.84.0 pytest>=7.3.2 pytest-xdist>=3.4.0 pytest-cov
           python -m pip install -ve . --no-build-isolation --no-index --no-deps -Csetup-args="--werror"

diff --git a/.github/workflows/wheels.yml b/.github/workflows/wheels.yml
@@ -152,7 +152,7 @@ jobs:
         run: echo "sdist_name=$(cd ./dist && ls -d */)" >> "$GITHUB_ENV"
 
       - name: Build wheels
-        uses: pypa/cibuildwheel@v2.21.3
+        uses: pypa/cibuildwheel@v2.22.0
         with:
          package-dir: ./dist/${{ startsWith(matrix.buildplat[1], 'macosx') && env.sdist_name || needs.build_sdist.outputs.sdist_file }}
         env:

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -19,7 +19,7 @@ ci:
     skip: [pyright, mypy]
 repos:
 -   repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.7.2
+    rev: v0.8.1
     hooks:
     -   id: ruff
         args: [--exit-non-zero-on-fix]
@@ -47,7 +47,7 @@ repos:
         types_or: [python, rst, markdown, cython, c]
         additional_dependencies: [tomli]
 -   repo: https://github.com/MarcoGorelli/cython-lint
-    rev: v0.16.2
+    rev: v0.16.6
     hooks:
     -   id: cython-lint
     -   id: double-quote-cython-strings
@@ -95,7 +95,7 @@ repos:
     - id: sphinx-lint
       args: ["--enable", "all", "--disable", "line-too-long"]
 -   repo: https://github.com/pre-commit/mirrors-clang-format
-    rev: v19.1.3
+    rev: v19.1.4
     hooks:
     - id: clang-format
       files: ^pandas/_libs/src|^pandas/_libs/include

diff --git a/asv_bench/benchmarks/groupby.py b/asv_bench/benchmarks/groupby.py
@@ -511,8 +511,7 @@ def setup(self, dtype, method, application, ncols, engine):
         # grouping on multiple columns
         # and we lack kernels for a bunch of methods
         if (
-            engine == "numba"
-            and method in _numba_unsupported_methods
+            (engine == "numba" and method in _numba_unsupported_methods)
             or ncols > 1
             or application == "transformation"
             or dtype == "datetime"

diff --git a/ci/code_checks.sh b/ci/code_checks.sh
@@ -73,66 +73,28 @@ if [[ -z "$CHECK" || "$CHECK" == "docstrings" ]]; then
         -i "pandas.Period.freq GL08" \
         -i "pandas.Period.ordinal GL08" \
         -i "pandas.RangeIndex.from_range PR01,SA01" \
-        -i "pandas.Series.dt.freq GL08" \
-        -i "pandas.Series.dt.unit GL08" \
-        -i "pandas.Series.pad PR01,SA01" \
         -i "pandas.Timedelta.max PR02" \
         -i "pandas.Timedelta.min PR02" \
         -i "pandas.Timedelta.resolution PR02" \
         -i "pandas.Timestamp.max PR02" \
         -i "pandas.Timestamp.min PR02" \
         -i "pandas.Timestamp.resolution PR02" \
         -i "pandas.Timestamp.tzinfo GL08" \
-        -i "pandas.api.types.is_re_compilable PR07,SA01" \
         -i "pandas.arrays.ArrowExtensionArray PR07,SA01" \
-        -i "pandas.arrays.IntegerArray SA01" \
-        -i "pandas.arrays.IntervalArray.length SA01" \
         -i "pandas.arrays.NumpyExtensionArray SA01" \
         -i "pandas.arrays.TimedeltaArray PR07,SA01" \
-        -i "pandas.core.groupby.DataFrameGroupBy.boxplot PR07,RT03,SA01" \
-        -i "pandas.core.groupby.DataFrameGroupBy.get_group RT03,SA01" \
-        -i "pandas.core.groupby.DataFrameGroupBy.indices SA01" \
-        -i "pandas.core.groupby.DataFrameGroupBy.nth PR02" \
-        -i "pandas.core.groupby.DataFrameGroupBy.nunique SA01" \
         -i "pandas.core.groupby.DataFrameGroupBy.plot PR02" \
-        -i "pandas.core.groupby.DataFrameGroupBy.sem SA01" \
-        -i "pandas.core.groupby.SeriesGroupBy.get_group RT03,SA01" \
-        -i "pandas.core.groupby.SeriesGroupBy.indices SA01" \
-        -i "pandas.core.groupby.SeriesGroupBy.is_monotonic_decreasing SA01" \
-        -i "pandas.core.groupby.SeriesGroupBy.is_monotonic_increasing SA01" \
-        -i "pandas.core.groupby.SeriesGroupBy.nth PR02" \
         -i "pandas.core.groupby.SeriesGroupBy.plot PR02" \
-        -i "pandas.core.groupby.SeriesGroupBy.sem SA01" \
-        -i "pandas.core.resample.Resampler.get_group RT03,SA01" \
-        -i "pandas.core.resample.Resampler.indices SA01" \
         -i "pandas.core.resample.Resampler.max PR01,RT03,SA01" \
         -i "pandas.core.resample.Resampler.mean SA01" \
         -i "pandas.core.resample.Resampler.min PR01,RT03,SA01" \
         -i "pandas.core.resample.Resampler.prod SA01" \
         -i "pandas.core.resample.Resampler.quantile PR01,PR07" \
-        -i "pandas.core.resample.Resampler.sem SA01" \
         -i "pandas.core.resample.Resampler.std SA01" \
         -i "pandas.core.resample.Resampler.transform PR01,RT03,SA01" \
         -i "pandas.core.resample.Resampler.var SA01" \
-        -i "pandas.errors.AttributeConflictWarning SA01" \
-        -i "pandas.errors.ChainedAssignmentError SA01" \
-        -i "pandas.errors.DuplicateLabelError SA01" \
-        -i "pandas.errors.IntCastingNaNError SA01" \
-        -i "pandas.errors.InvalidIndexError SA01" \
-        -i "pandas.errors.NullFrequencyError SA01" \
-        -i "pandas.errors.NumExprClobberingError SA01" \
-        -i "pandas.errors.NumbaUtilError SA01" \
-        -i "pandas.errors.OutOfBoundsTimedelta SA01" \
-        -i "pandas.errors.PerformanceWarning SA01" \
-        -i "pandas.errors.PossibleDataLossError SA01" \
-        -i "pandas.errors.UndefinedVariableError PR01,SA01" \
-        -i "pandas.errors.UnsortedIndexError SA01" \
         -i "pandas.errors.ValueLabelTypeMismatch SA01" \
-        -i "pandas.infer_freq SA01" \
-        -i "pandas.io.json.build_table_schema PR07,RT03,SA01" \
-        -i "pandas.io.stata.StataWriter.write_file SA01" \
         -i "pandas.plotting.andrews_curves RT03,SA01" \
-        -i "pandas.plotting.scatter_matrix PR07,SA01" \
         -i "pandas.tseries.offsets.BDay PR02,SA01" \
         -i "pandas.tseries.offsets.BQuarterBegin.is_on_offset GL08" \
         -i "pandas.tseries.offsets.BQuarterBegin.n GL08" \

diff --git a/doc/source/conf.py b/doc/source/conf.py
@@ -242,7 +242,6 @@
     "external_links": [],
     "footer_start": ["pandas_footer", "sphinx-version"],
     "github_url": "https://github.com/pandas-dev/pandas",
-    "twitter_url": "https://twitter.com/pandas_dev",
     "analytics": {
         "plausible_analytics_domain": "pandas.pydata.org",
         "plausible_analytics_url": "https://views.scientific-python.org/js/script.js",
@@ -258,6 +257,11 @@
     # patch version doesn't compare as equal (e.g. 2.2.1 != 2.2.0 but it should be)
     "show_version_warning_banner": False,
     "icon_links": [
+        {
+            "name": "X",
+            "url": "https://x.com/pandas_dev",
+            "icon": "fa-brands fa-square-x-twitter",
+        },
         {
             "name": "Mastodon",
             "url": "https://fosstodon.org/@pandas_dev",