✅ Add ci with nf-test #9

	name: nf-all-classifiers CI

	on:
	push:
	branches: [ main ]
	pull_request:
	branches: [ main ]

	jobs:
	test_pipeline:
	runs-on: ubuntu-latest
	name: Job to run the test workflow
	steps:
	- uses: actions/checkout@v3
	- uses: nf-core/setup-nextflow@v1
	- name: Install nf-test
	run: \|
	wget -qO- https://code.askimed.com/install/nf-test \| bash
	sudo mv nf-test /usr/local/bin/
	- name: Run test data
	run: \|
	# nf-test run tests/workflow.test
	mkdir -p /data/results

	nextflow run main.nf -profile cloud \
	--tumor TEST \
	--tumorBam tests/data/tumor/tumor.bam \
	--refGenome tests/data/ref/genome.fasta \
	--loci /data/copy_number/GermlineHetPon.37.vcf.gz \
	--gcProfile /data/copy_number/GC_profile.1000bp.37.cnp \
	--diploidRegions /data/copy_number/DiploidRegions.37.bed.gz \
	--ensemblDataDir /data/common/common \
	--genomeVersion V37 \
	--outdir /data/results
	- name: Check result
	run: \|
	if [ ! -f /data/results/TEST.purple.purity.tsv ]; then
	echo "Result 'TEST.purple.purity.tsv' does not exist"
	exit 1
	fi

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