Update nextflow.config

papaemmelab · Sep 5, 2023 · 3eb80ad · 3eb80ad
1 parent 6e04932
commit 3eb80ad
Showing 1 changed file with 1 addition and 16 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -30,7 +30,6 @@ profiles {
         singularity.autoMounts = true
         process {
             executor = 'lsf'
-            // container = '/juno/work/isabl/local/hmftools/hmftools.simg'
         }
     }
 
@@ -42,21 +41,7 @@ profiles {
 
         process {
             executor = 'local'
-            withName:PREPARECOUNTS {
-                container = ''
-            }
-            withName:ALLSORTS {
-                container = ''
-            }
-            withName:ALLSPICE {
-                container = ''
-            }
-            withName:ALLCATCHR {
-                container = ''
-            }
-            withName:RESULTS {
-                container = ''
-            }
+            container = '/juno/work/isabl/local/hmftools/hmftools.simg'
         }
     }
 }