🔧 run absolute paths in tests

papaemmelab · Jan 22, 2024 · 8a6be85 · 8a6be85
1 parent 4e041a1
commit 8a6be85
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diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -24,8 +24,8 @@ jobs:
         run: |
           nextflow run main.nf -profile cloud \
             --tumor TEST \
-            --tumorBam tests/data/tumor.bam \
-            --refGenome tests/data/reference.fasta \
+            --tumorBam `pwd`/tests/data/tumor.bam \
+            --refGenome `pwd`/tests/data/reference.fasta \
             --outdir /app/results
       - name: Check result
         run: |

diff --git a/README.md b/README.md
@@ -53,5 +53,5 @@ sh tests/run_test.sh
 docker buildx create --name papaemmelab-builder --use
 
 # Build the image
-docker buildx build --platform linux/amd64,linux/arm64 -t papaemmelab/purple:latest . --push
+docker buildx build --platform linux/amd64,linux/arm64 -t papaemmelab/purple:v0.1.0 . --push
 ```