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💎 add changes in API motivated by feedback

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@jsmedmar jsmedmar released this 27 Feb 23:15
· 70 commits to master since this release
a3fa8fa

This refactor was motivated by feedback from DataBiosphere/toil#2064 (comment):

  • use subprocess32
  • use docker.from_env(version='auto')
  • fix the way workdir was mapped to /tmp on singularity containers
  • avoid shadowing of subprocess names def check_output and def check_call
  • avoid use of /dev/null