🚀 add support for resource retry
CustomLSF
now supports retry when jobs are killed by memory or runtime resource usage. Configure with the following environment variables:
option | description |
---|---|
TOIL_CONTAINER_RUNTIME | set a default runtime in minutes |
TOIL_CONTAINER_PER_SLOT | not needed with toil > 3.18.0, else set to "Y" |
TOIL_CONTAINER_RETRY_MEM | retry memory in integer GB (default "60") |
TOIL_CONTAINER_RETRY_RUNTIME | retry runtime in integer minutes (default "40000") |
TOIL_CONTAINER_RUNTIME_FLAG | bsub runtime flag (default "-W") |