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🚀 add support for resource retry
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@jsmedmar jsmedmar released this 09 Jan 23:38
· 29 commits to master since this release
v1.1.1
f6ea63b
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Learn about vigilant mode.

CustomLSF now supports retry when jobs are killed by memory or runtime resource usage. Configure with the following environment variables:

option description
TOIL_CONTAINER_RUNTIME set a default runtime in minutes
TOIL_CONTAINER_PER_SLOT not needed with toil > 3.18.0, else set to "Y"
TOIL_CONTAINER_RETRY_MEM retry memory in integer GB (default "60")
TOIL_CONTAINER_RETRY_RUNTIME retry runtime in integer minutes (default "40000")
TOIL_CONTAINER_RUNTIME_FLAG bsub runtime flag (default "-W")
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