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Releases: papaemmelab/toil_container

💎 1.0.0 given production dependency on toil container

08 Oct 14:32
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isabl pipelines will depend on this tool. This version removes the LSF internet flag (it was an MSK only thing) and uses W instead of We for runtime (We actually means estimated runtime). It also adds support for LSF 10 and sets toil dependency to 3.18.0.

🐛 fix bug for case not considered, make dependencies explicit

14 Jun 21:55
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🐛 jobName must be slugified

01 Jun 20:59
b3a36e4
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v0.2.6

💎 bump to 0.2.6

🚀 add support for LSF runtime and internet

06 Apr 20:13
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🚀add help container feature

27 Mar 18:57
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🐛singularity doesn't inherit environment

19 Mar 20:38
7e32ff1
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🚀 avoid singularity home overwrite

19 Mar 20:11
1b83b38
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See #16.

Make sure that tmp dirs are removed, that singularity doesn't overwrite $HOME and that tmp dirs are unique.

🐛 fix sdist install

01 Mar 22:12
b3aa6c3
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Add setup.json to MANIFEST.in

💎 add changes in API motivated by feedback

27 Feb 23:15
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This refactor was motivated by feedback from DataBiosphere/toil#2064 (comment):

  • use subprocess32
  • use docker.from_env(version='auto')
  • fix the way workdir was mapped to /tmp on singularity containers
  • avoid shadowing of subprocess names def check_output and def check_call
  • avoid use of /dev/null

🐛 fix python package distribution

16 Feb 18:28
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Description

This release, contains a patch that was breaking the usage of the package when it was installed from a pypi wheels distribution package.

🐛 Bug fixes

  • change the way VERSION is handled inside the project.

📝 Other Changes

  • simplify MANIFEST.in
  • simplify tox.ini