💎 1.0.0 given production dependency on toil container

isabl pipelines will depend on this tool. This version removes the LSF internet flag (it was an MSK only thing) and uses W instead of We for runtime (We actually means estimated runtime). It also adds support for LSF 10 and sets toil dependency to 3.18.0.

🐛 fix bug for case not considered, make dependencies explicit

v0.2.7

💎 bump to 0.2.7

🐛 jobName must be slugified

v0.2.6

💎 bump to 0.2.6

🚀 add support for LSF runtime and internet

See #14.

🚀add help container feature

See #18.

🐛singularity doesn't inherit environment

See leukgen@0a5e3b5.

🚀 avoid singularity home overwrite

See #16.

Make sure that tmp dirs are removed, that singularity doesn't overwrite $HOME and that tmp dirs are unique.

🐛 fix sdist install

Add setup.json to MANIFEST.in

💎 add changes in API motivated by feedback

This refactor was motivated by feedback from DataBiosphere/toil#2064 (comment):

• use subprocess32
• use docker.from_env(version='auto')
• fix the way workdir was mapped to /tmp on singularity containers
• avoid shadowing of subprocess names def check_output and def check_call
• avoid use of /dev/null

🐛 fix python package distribution

Description

This release, contains a patch that was breaking the usage of the package when it was installed from a pypi wheels distribution package.

🐛 Bug fixes

• change the way VERSION is handled inside the project.

📝 Other Changes

• simplify MANIFEST.in
• simplify tox.ini