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Add the get_all_* functions #23

Merged
merged 55 commits into from
Oct 15, 2024
Merged

Add the get_all_* functions #23

merged 55 commits into from
Oct 15, 2024

Commits on Sep 27, 2024

  1. Merge pull request #21 from pbs-assess/master 

    Merge pull request #20 from pbs-assess/get-all
    @ecophilina
    ecophilina authored Sep 27, 2024
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Commits on Oct 1, 2024

  1. return species code with length types to allow for use with multi spp… 

    … calls
    @ecophilina
    ecophilina committed Oct 1, 2024
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  2. new get_all* functions and all supporting code

    @ecophilina
    ecophilina committed Oct 1, 2024
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  3. document new functions

    @ecophilina
    ecophilina committed Oct 1, 2024
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Commits on Oct 2, 2024

  1. untested draft light-weight comparison functions and example script

    @ecophilina
    ecophilina committed Oct 2, 2024
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Commits on Oct 3, 2024

  1. updated with load_all() and subfolders

    Rogers authored and Rogers committed Oct 3, 2024
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  2. updated with missing package::

    Rogers authored and Rogers committed Oct 3, 2024
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  3. get all vignette

    @ecophilina
    ecophilina committed Oct 3, 2024
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Commits on Oct 4, 2024

  1. fix bug in comparison functions

    @ecophilina
    ecophilina committed Oct 4, 2024
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  2. vignette edits

    @ecophilina
    ecophilina committed Oct 4, 2024
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  3. fixed precautionary object resets

    Rogers authored and Rogers committed Oct 4, 2024
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  4. Merge branch 'get-all' of https://github.com/pbs-assess/gfdata into g… 

    …et-all
    Rogers authored and Rogers committed Oct 4, 2024
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  5. make remove duplicates the default for get_all_survey_sets

    @ecophilina
    ecophilina committed Oct 4, 2024
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  6. Merge branch 'get-all' of https://github.com/pbs-assess/gfdata into g… 

    …et-all
    @ecophilina
    ecophilina committed Oct 4, 2024
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  7. move the dropping of all zeros and make it optional

    @ecophilina
    ecophilina committed Oct 4, 2024
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  8. Merge branch 'get-all' of https://github.com/pbs-assess/gfdata into g… 

    …et-all
    @ecophilina
    ecophilina committed Oct 4, 2024
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  9. update default args

    @ecophilina
    ecophilina committed Oct 4, 2024
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Commits on Oct 5, 2024

  1. vignette formatting

    @ecophilina
    ecophilina committed Oct 5, 2024
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  2. Merge branch 'get-all' of https://github.com/pbs-assess/gfdata into g… 

    …et-all
    @ecophilina
    ecophilina committed Oct 5, 2024
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Commits on Oct 7, 2024

  1. draft version flexible to argument changes

    @ecophilina
    ecophilina committed Oct 7, 2024
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Commits on Oct 8, 2024

  1. working for any argument and using function defaults when not provided

    @ecophilina
    ecophilina committed Oct 8, 2024
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  2. and grouping_area_km2 to event data returned for both functions

    @ecophilina
    ecophilina committed Oct 8, 2024
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  3. functionize area swept calc

    @ecophilina
    ecophilina committed Oct 8, 2024
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  4. minor clean up/style

    @ecophilina
    ecophilina committed Oct 8, 2024
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  5. vignette edits from LR and add design-based section

    @ecophilina
    ecophilina committed Oct 8, 2024
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Commits on Oct 9, 2024

  1. fix error in compare samples function; make both compare functions ro… 

    …bust to Null results
    @ecophilina
    ecophilina committed Oct 9, 2024
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  2. more vignette edits

    @ecophilina
    ecophilina committed Oct 9, 2024
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  3. better way of checking for gear type differences

    @ecophilina
    ecophilina committed Oct 9, 2024
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  4. more vignette edits

    @ecophilina
    ecophilina committed Oct 9, 2024
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  5. minor vignette and comparison edits

    @ecophilina
    ecophilina committed Oct 9, 2024
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  6. more minor edits

    @ecophilina
    ecophilina committed Oct 9, 2024
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  7. more vignette edits

    @ecophilina
    ecophilina committed Oct 9, 2024
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Commits on Oct 10, 2024

  1. fix problem with missing sublevel data for ssid 14--now only gets sub… 

    …level data for events with gear differences
    @ecophilina
    ecophilina committed Oct 10, 2024
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  2. update vignette to match change in when skate level data is returned

    @ecophilina
    ecophilina committed Oct 10, 2024
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  3. add warning in case situations arise where skate-level counts are inc… 

    …onsistent with counts for events with gear differences
    @ecophilina
    ecophilina committed Oct 10, 2024
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  4. minor fixes to last change

    @ecophilina
    ecophilina committed Oct 10, 2024
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  5. for samples, add checks to make sure counts are coming in currectly w… 

    …hen at the set level
    @ecophilina
    ecophilina committed Oct 10, 2024
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  6. more vignette edits

    @ecophilina
    ecophilina committed Oct 10, 2024
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  7. fix for edge case of missing sub level id for some gear comparision s… 

    …pecimens
    @ecophilina
    ecophilina committed Oct 10, 2024
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  8. tiny edit

    @ecophilina
    ecophilina committed Oct 10, 2024
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  9. Improve messages to include the filtering options used.

    @ecophilina
    ecophilina committed Oct 10, 2024
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  10. document and fixes for passing devtools::check

    @ecophilina
    ecophilina committed Oct 10, 2024
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Commits on Oct 11, 2024

  1. better message placement; filter ssid 0 when a duplication of data fr… 

    …om other ssid
    @ecophilina
    ecophilina committed Oct 11, 2024
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  2. Merge branch 'get-all' of https://github.com/pbs-assess/gfdata into g… 

    …et-all
    @ecophilina
    ecophilina committed Oct 11, 2024
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  3. minor vignette edits

    @ecophilina
    ecophilina committed Oct 11, 2024
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  4. Merge branch 'get-all' of https://github.com/pbs-assess/gfdata into g… 

    …et-all
    @ecophilina
    ecophilina committed Oct 11, 2024
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  5. more minor edits

    @ecophilina
    ecophilina committed Oct 11, 2024
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  6. fixing vignette check issues

    @ecophilina
    ecophilina committed Oct 11, 2024
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Commits on Oct 12, 2024

  1. precompile option for get-all vignette

    @ecophilina
    ecophilina committed Oct 12, 2024
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  2. update ignore and precompiled version

    @ecophilina
    ecophilina committed Oct 12, 2024
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  3. test commit

    @ecophilina
    ecophilina committed Oct 12, 2024
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Commits on Oct 15, 2024

  1. implement precompile option for orginal vignette

    @ecophilina
    ecophilina committed Oct 15, 2024
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  2. document

    @ecophilina
    ecophilina committed Oct 15, 2024
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  3. Merge branch 'get-all' of https://github.com/pbs-assess/gfdata into g… 

    …et-all
    @ecophilina
    ecophilina committed Oct 15, 2024
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  4. buildignore knitr-cache

    @ecophilina
    ecophilina committed Oct 15, 2024
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