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neitmant committed Sep 5, 2022
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## New Features

- New function `get_summary_records()` creates summary records e.g. derive analysis value (`AVAL`) from multiple records, only keeping the derived observations (#525)
- `get_summary_records()` creates summary records e.g. derive analysis value (`AVAL`) from multiple records, only keeping the derived observations (#525)

- New function `derive_param_framingham()` which adds a Parameter for Framingham Heart Study Cardiovascular Disease 10-Year Risk Score (#977)
- `derive_param_framingham()` adds a Parameter for Framingham Heart Study Cardiovascular Disease 10-Year Risk Score (#977)

- New function `compute_qual_imputation()` which imputes values when qualifier exists in character result (#976)
- `compute_qual_imputation()` imputes values when qualifier exists in character result (#976)

- `derive_vars_merged_lookup()` maps lookup tables (#940)

- New function to map lookup table `derive_vars_merged_lookup()` (#940)

- New function `filter_confirmation()` for filtering out confirmed observations
- `filter_confirmation()` filters out confirmed observations
(#1292) including supporting functions `count_vals()`, `min_cond()`, and
`max_cond()`.

- New function `derive_var_confirmation_flag()` for deriving a flag which
- `derive_var_confirmation_flag()` derives a flag which
depends on other observations of the input dataset (#1293)

- New metadata data set called `atoxgr_criteria_ctcv4` which holds criteria for lab grading
based on [Common Terminology Criteria for Adverse Events (CTCAE) v4.0](https://ctep.cancer.gov/protocoldevelopment/electronic_applications/ctc.htm)
- `derive_var_atoxgr()` derives lab toxicity/severity grade `ATOXGR`
from `ATOXGRL` and `ATOXGRH`. `ATOXGRL` holds toxicity/severity grade for low lab values,
and `ATOXGRH` holds toxicity/severity grade for high lab values.

- New function `derive_var_atoxgr_dir()` for deriving lab toxicity/severity grade for low
- `derive_var_atoxgr_dir()` derives lab toxicity/severity grade for low
lab values (`ATOXGRL`) or for high lab values (`ATOXGRH`). The grading is created from
metadata.

- New function `derive_var_atoxgr()` that derives lab toxicity/severity grade `ATOXGR`
from `ATOXGRL` and `ATOXGRH`. `ATOXGRL` holds toxicity/severity grade for low lab values,
and `ATOXGRH` holds toxicity/severity grade for high lab values.
- New metadata data set called `atoxgr_criteria_ctcv4` which holds criteria for lab grading
based on [Common Terminology Criteria for Adverse Events (CTCAE) v4.0](https://ctep.cancer.gov/protocoldevelopment/electronic_applications/ctc.htm)


## Updates of Existing Functions

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- `value_var` parameter added to `derive_vars_atc()` (#1120)

- `format_eoxxstt_default()` - Updated the default value of EOSSTT for screen failure patients (#885)
- `format_eoxxstt_default()` - Updated the default value of EOSSTT for screen failure patients (#885)

- The imputation functions (`derive_vars_dtm()`, `derive_vars_dt()`,
`convert_dtc_to_dtm()`, `convert_dtc_to_dt()`) have been enhanced to address
Expand All @@ -67,13 +67,13 @@ users feedback (#1300):

- `order` parameter added to `dthcaus_source()` which allows an additional
character vector to be used for sorting the `dataset`, `derive_vars_dthcaus()`
updated to process additional parameter (#1125)
updated to process additional parameter (#1125).

- `create_single_dose_dataset()` Fixed bug where ASTDTM and AENDTM were not updated when start_date=ASTDT and end_date=AENDT. The function has been amended to now require start_datetime and end_datetime parameters in addition to start_date and end_date.The keep_source_vars has been added to specify the variables to be retained from the source dataset (#1224)
- `create_single_dose_dataset()` Fixed bug where `ASTDTM` and `AENDTM` were not updated when `start_date = ASTDT` and `end_date = AENDT`. The function has been amended to now require `start_datetime` and `end_datetime` parameters in addition to `start_date` and `end_date`.The `keep_source_vars` has been added to specify the variables to be retained from the source dataset (#1224)

## Breaking Changes

- Moved all developer-facing functions and vignettes to `{admiraldev}`. `{admiraldev}` is now a dependency of `{admiral}` (#1231)
- Moved all developer-facing functions and vignettes to `{admiraldev}`. `{admiraldev}` is now a dependency of `{admiral}` (#1231)

- All ADaM datasets but `admiral_adsl` have been removed from the package (#1234)

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## Documentation

- New admh R Script template added. Use `admiral::use_ad_template("admh")` to access
(#502)
- New ADMH template script can be accessed using `admiral::use_ad_template("admh")` (#502)

- New vignette "Higher Order Functions" (#1047)

- New vignette "Lab Grading" (#1369)

- Fixed `derive_var_disposition_status()` argument to render correctly (#1268)

- Added link to [pharmaverse YouTube channel](https://www.youtube.com/channel/UCxQFEv8HNqM01DXzdQLCy6Q) to README

- New vignette "Lab Grading" (#1369)

## Various

- Restructured Reference page and updated **all** functions to use `family` tag
in roxygen headers for finding similar functions. (#1105)

- Renamed Reference page to Functions and Articles to User Guides. Moved Developer
Vignettes to `{admiraldev}` (#1356)
- Rename "Articles" page on website to "User Guides" and moved developer vignettes to `{admiraldev}` website (#1356)


# admiral 0.7.1
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