style: fix CMD check issues

pwwang · Oct 14, 2024 · 33d039b · 33d039b
1 parent bcb9304
commit 33d039b
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Showing 3 changed files with 6 additions and 3 deletions.
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -55,7 +55,7 @@ jobs:
             any::Seurat, any::concaveman, any::gridGraphics, any::ggVennDiagram,
             any::clustree, any::ggwordcloud, any::ggalluvial, any::ggpubr,
             any::ggforce, any::ggraph, any::ggridges, any::hexbin, any::igraph,
-            any::scattermore
+            any::scattermore, any::ggupset
 
       - uses: r-lib/actions/check-r-package@v2
 

diff --git a/DESCRIPTION b/DESCRIPTION
@@ -32,6 +32,7 @@ Suggests:
     ggpubr,
     ggraph,
     ggridges,
+    ggupset,
     ggwordcloud,
     ggVennDiagram (>= 1.5.0),
     hexbin,

diff --git a/R/data.R b/R/data.R
@@ -60,8 +60,10 @@ NULL
 #'   pancreas_sub[["SubCellType"]] <- pancreas_sub[["clusters"]]
 #'   pancreas_sub[["clusters_coarse"]] <- pancreas_sub[["clusters"]] <- NULL
 #'   pancreas_sub[["Phase"]] <- ifelse(pancreas_sub$S_score > pancreas_sub$G2M_score, "S", "G2M")
-#'   pancreas_sub[["Phase"]][apply(pancreas_sub[[]][, c("S_score", "G2M_score")], 1, max) < 0, ] <- "G1"
-#'   pancreas_sub[["Phase", drop = TRUE]] <- factor(pancreas_sub[["Phase", drop = TRUE]], levels = c("G1", "S", "G2M"))
+#'   pancreas_sub[["Phase"]][
+#'       apply(pancreas_sub[[]][, c("S_score", "G2M_score")], 1, max) < 0, ] <- "G1"
+#'   pancreas_sub[["Phase", drop = TRUE]] <- factor(pancreas_sub[["Phase", drop = TRUE]],
+#'       levels = c("G1", "S", "G2M"))
 #'   pancreas_sub[["PCA"]] <- pancreas_sub[["X_pca"]]
 #'   pancreas_sub[["UMAP"]] <- pancreas_sub[["X_umap"]]
 #'   pancreas_sub[["X_umap"]] <- pancreas_sub[["X_pca"]] <- NULL