Bump cython, fixes for tests, and fixes for deprecation warnings #312
Workflow file for this run
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| name: Tests | ||
| on: | ||
| pull_request: | ||
| schedule: | ||
| # Run test at 0400 UTC on Saturday. | ||
| - cron: '0 4 * * 6' | ||
| # Run test at 0400 UTC on day 1 of the month to create auto-generated | ||
| # code afresh and cache it. | ||
| - cron: '0 4 1 * *' # Ref https://crontab.guru/#0_4_1_*_* | ||
| jobs: | ||
| tests: | ||
| strategy: | ||
| matrix: | ||
| os: [ubuntu-latest, macos-latest, windows-latest] | ||
| python-version: [3.11] | ||
| runs-on: ${{ matrix.os }} | ||
| defaults: | ||
| run: | ||
| shell: bash -l {0} | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Set up Python ${{ matrix.python-version }} | ||
| uses: conda-incubator/setup-miniconda@v3 | ||
| with: | ||
| auto-update-conda: true | ||
| python-version: ${{ matrix.python-version }} | ||
| channels: conda-forge | ||
| - name: Install dependencies on Linux/MacOS | ||
| run: | | ||
| conda info | ||
| conda install -c conda-forge pocl pyopencl | ||
| python -c 'import pyopencl as cl' | ||
| if: ${{ runner.os != 'Windows' }} | ||
| - name: Setup compyle config on MacOS to use openmp enabled clang from homebrew | ||
| run: | ||
| mkdir -p ~/.compyle | ||
| touch ~/.compyle/config.py | ||
| echo "import os" >> ~/.compyle/config.py | ||
| echo "os.environ['CC'] = '$(brew --prefix llvm@15)/bin/clang'" >> ~/.compyle/config.py | ||
| echo "os.environ['CXX'] = '$(brew --prefix llvm@15)/bin/clang++'" >> ~/.compyle/config.py | ||
| export CPPFLAGS="-I$(brew --prefix libomp)/include" | ||
| export LDFLAGS="-L$(brew --prefix libomp)/lib" | ||
| python -c "import os; OMP_CFLAGS=os.environ.get('CPPFLAGS').split(', '); if OMP_CFLAGS is not None: print(f'{OMP_CFLAGS=}')" >> ~/.compyle/config.py | ||
| python -c "import os; OMP_LINK=os.environ.get('LDFLAGS').split(', '); if OMP_LINK is not None: print(f'{OMP_LINK=}')" >> ~/.compyle/config.py | ||
| if: ${{ runner.os == 'macOS' }} | ||
| - name: Install dependencies | ||
| run: | | ||
| conda info | ||
| conda install -c conda-forge numpy cython h5py | ||
| python -m pip install --upgrade pip setuptools wheel | ||
| python -m pip install https://github.com/pypr/cyarray/zipball/master | ||
| python -m pip install https://github.com/pypr/compyle/zipball/master | ||
| python -m pip install -r requirements.txt -r requirements-test.txt | ||
| python setup.py develop | ||
| python -m pip list | ||
| # Cache auto-generated code. Cache key changes every month. | ||
| # Thanks https://stackoverflow.com/a/60942437 | ||
| - name: Get month to use as cache key. | ||
| id: month | ||
| run: echo "month==$(date +'%m')" >> $GITHUB_OUTPUT | ||
| - name: Deal with auto-generated code cache | ||
| uses: actions/cache@v4 | ||
| with: | ||
| path: | | ||
| ~/.pysph | ||
| ~/.compyle | ||
| key: ${{ runner.os }}-${{ steps.month.outputs.month }} | ||
| - name: Run tests | ||
| run: | | ||
| python -m pytest -v -m 'not slow or slow' | ||
