Skip to content

VCF representation & Dash integration #101

VCF representation & Dash integration

VCF representation & Dash integration #101

name: Python Package using Conda
on: [push, pull_request]
jobs:
build-linux:
runs-on: ubuntu-latest
strategy:
max-parallel: 5
steps:
- uses: actions/checkout@v3
- name: Set up Python 3.12
uses: actions/setup-python@v3
with:
python-version: '3.12'
- name: Add conda to system path
run: |
# $CONDA is an environment variable pointing to the root of the miniconda directory
echo $CONDA/bin >> $GITHUB_PATH
- name: Install dependencies
run: |
# I am using the pip installed by conda, bad practice but OK in C/I I think
pip install -e .[all]
pip install ruff pytest
- name: Check formatting with ruff
run: |
ruff format --check src
- name: Test with pytest
run: |
conda install pytest
pytest --ignore=examples