Mr Nobody

1.9.0 (2021-07-19)

Added

• Introduce life.qbic.utils.MaxQuantParser to validate the filestructure resulting from a maxQuant run #60

Fixed

• Ensures, that the BioinformaticAnalysisParser throws only exceptions as stated in the DataSetParser interface #62

Dependencies

Deprecated

Tangerine Tulip

1.8.0 (2021-05-07)

Added

• Add qube support (#39)

• Add DatasetParser as interface for parsing datasets life/qbic/datasets/parsers/DatasetParser.groovy (#49)

• Add ImagingMetadataValidator for validating json files containing imaging metadata life/qbic/utils/ImagingMetadataValidator.groovy, with test life/qbic/utils/ImagingMetadataValidatorSpec.groovy (#48)

• Introduce life.qbic.utils.BioinformaticAnalysisParser class to parse and validate the filestructure resulting from Nfcore pipeline output (#51)

Fixed

Dependencies

• Upgrade life.qbic:groovy:data-model-lib:jar:2.4.0 -> 2.7.0

• Downgrade java 11 -> java 8

• Remove parent-pom and introduce a slim own definition of dependencies.

• Re-introduce org.apache.commons.commons-lang3 dependency with version 3.7.0

Deprecated

Red Rose

Integrates our new nexus repository with a secure link

Blue Ocean

Upgrades the parent POM to 3.1.0 and references to the new nexus instance

Release 1.6.0

This release adds proper handling of unclassified reads and the corresponding folder.

Patch 1.5.2

Uses correct data model lib version for support of nanopore adapters

White Orchid

• Ignore the quality control folder for now
• Acquire the Oxford Nanopore instrument output schema from the data-model-lib
• Support unclassified folders, that hold read information with missing and/or unknown sample code to the experiment

Version 1.4.4

Validation errors of the Nanopore file structure are now reported to the log more verbosely.

Version 1.4.3

Functionality to parse Nanopore data structure

Minor release

• Adds support for QBiC services by introducing a ConsulServiceFactory that can be used to retrieve different service types from QBiC's service registry