Supplemental data and website for Lima-Mendez, G., et al. (2015). Determinants of community structure in the global plankton interactome Science, 348(6237).
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- Description:
- Charts A, B, and C compare the NMSE (Normalized Mean Square Error) distributions of real and randomized data.
- Chart D plots the distribution of paired differences between NMSEs obtained from the environmental (ENV) and original abundance (OTU) data (blue) versus ENV and randomized OTU data (gray).
- Chart E shows the AUC (Area under the curve) values of the binary classifiers obtained by thresholding the output of the regression model.
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- Description:
- Variation partitioning of the effects of abiotic, geography, and their combined effect on plankton communities (fraction and depth wise).
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- Description:
- Displays the 51 modules resulting from leading Eigenvector clustering of the positively correlated taxon network.
- Flow chart summarizing taxon edge numbers for different analyses.
- Venn diagram depicting the overlap between taxon edges that are part of environmental triplets, ocean-driven taxon edges, and taxon edges classified as indirect.
- Bar chart showing the ratio between node percentages on phylum level in the 11,043 environmentally driven taxon edges versus the remaining 81,590 taxon edges.
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- Description:
- Circos plot showing order-level copresences and mutual exclusions in individual fractions and layers.
- Band size for each taxon is proportional to the number of taxon edges, and ribbon width is proportional to the numbers of copresence/mutual exclusions within and between taxa.
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- Description:
- Examples of edges showing global copresence and mutual exclusion patterns.
- Ocean specific edges for Mediterranean Sea, South Pacific Ocean, Indian Ocean, and Red Sea.
- Southern Ocean has a distinct profile of region-specific edges dominated by bacterial taxa.
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- Parasites in large fractions may co-occur with their hosts or with unknown parasites.
- Distribution showing the taxonomic breakdown of the partners of parasites in the large fractions.
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- Annotated genome contigs of putative novel bacteriophages lacking viral representatives in the RefSeq database.
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- Bacteriophage-host adjacency matrix re-arranged to visualize modularity and nestedness.
- The adjacency matrix consists of positive associations between 816 bacteriophages and 451 hosts predicted for the surface and deep chlorophyll maximum layers.
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- Description:
- Confocal laser scanning microscope images of the acoel flatworm containing several microalgal cells intracellularly.
- Sequence alignment of the V9 Tara-oceans metabarcode of the acoel flatworm from the predicted interaction and six V9 sequences PCR amplified from six acoel flatworms found in station 22 that host symbiotic microalgae.
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- FASTA
| Name | Size | Description | Download |
|---|---|---|---|
| W1 | 98K | Sample information | Download |
| W2 | 809K | Sample Environmental parameters | Download |
| W3 | 19K | Variation partitioning analysis | Download |
| W4 | 2.0M | Random forest results | Download |
| W5 | 38K | False discovery rate assessed with null models | Download |
| W6 | 36K | Network Properties | Download |
| W7 | 9.6M | The TARA ocean interactome | Download |
| W8 | 1.6M | Indirect edge detection results | Download |
| W9 | 2.3M | Reference interactions among eukaryotic plankton | Download |
| W10 | 285K | Phylogenetic and geographic patterns in the interactome | Download |
| W11 | 65K | Plankton Functional Types mapped to the interactome | Download |
| W12 | 106K | Putative Bacteriophage-Host interactions predicted | Download |
| W13 | 61K | Modularity and nestedness | Download |
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