allow multiple barcode sequences #49
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: test-python-package | |
| on: [push, pull_request] | |
| jobs: | |
| build-and-test: | |
| outputs: | |
| VERSION: ${{ steps.get-version.outputs.VERSION }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: nschloe/action-cached-lfs-checkout@v1 | |
| - uses: actions/setup-python@v4 | |
| name: Install Python | |
| with: | |
| python-version: '3.10' | |
| - uses: ./.github/actions/setup-rust | |
| with: | |
| cache: true | |
| - name: Install dependencies | |
| run: | | |
| sudo pip install --upgrade pip | |
| pip install --user pytest hypothesis==6.72.4 wheel | |
| - name: Build wheel files | |
| run: | | |
| cd ${GITHUB_WORKSPACE}/python | |
| mkdir ${GITHUB_WORKSPACE}/wheel_files | |
| pip wheel . --wheel-dir ${GITHUB_WORKSPACE}/wheel_files | |
| - name: Test Python package | |
| run: | | |
| pip install --user ${GITHUB_WORKSPACE}/wheel_files/*.whl | |
| - name: Get precellar version | |
| id: get-version | |
| run: | | |
| VERSION_NUMBER=$(python -c "import precellar;print(precellar.__version__)") | |
| echo $VERSION_NUMBER | |
| echo "VERSION=$VERSION_NUMBER" >> $GITHUB_OUTPUT | |
| - name: Upload wheel files as artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheel-files | |
| path: ./wheel_files/precellar*.whl | |
| build-wheel: | |
| needs: build-and-test | |
| if: ${{ startsWith(github.ref, 'refs/tags/') || contains(github.event.head_commit.message, '[wheel]') }} | |
| uses: regulatory-genomics/precellar/.github/workflows/wheels.yml@main | |
| publish: | |
| needs: build-wheel | |
| runs-on: ubuntu-latest | |
| permissions: | |
| id-token: write | |
| if: ${{ startsWith(github.ref, 'refs/tags') }} | |
| steps: | |
| - name: Download wheel files | |
| uses: actions/download-artifact@v4 | |
| with: | |
| path: dist | |
| pattern: precellar-* | |
| merge-multiple: true | |
| - name: Publish to PyPI | |
| uses: pypa/gh-action-pypi-publish@v1.8.14 |