remove unnecessary ref and mut #67
Workflow file for this run
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name: test-python-package | |
on: [push, pull_request] | |
jobs: | |
build-and-test: | |
outputs: | |
VERSION: ${{ steps.get-version.outputs.VERSION }} | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout code | |
uses: nschloe/action-cached-lfs-checkout@v1 | |
- uses: actions/setup-python@v4 | |
name: Install Python | |
with: | |
python-version: '3.10' | |
- uses: ./.github/actions/setup-rust | |
with: | |
cache: true | |
- name: Install dependencies | |
run: | | |
sudo pip install --upgrade pip | |
pip install --user pytest hypothesis==6.72.4 wheel | |
- name: Build wheel files | |
run: | | |
cd ${GITHUB_WORKSPACE}/python | |
mkdir ${GITHUB_WORKSPACE}/wheel_files | |
pip wheel . --wheel-dir ${GITHUB_WORKSPACE}/wheel_files | |
- name: Test Python package | |
run: | | |
pip install --user ${GITHUB_WORKSPACE}/wheel_files/*.whl | |
- name: Get precellar version | |
id: get-version | |
run: | | |
VERSION_NUMBER=$(python -c "import precellar;print(precellar.__version__)") | |
echo $VERSION_NUMBER | |
echo "VERSION=$VERSION_NUMBER" >> $GITHUB_OUTPUT | |
- name: Upload wheel files as artifacts | |
uses: actions/upload-artifact@v4 | |
with: | |
name: wheel-files | |
path: ./wheel_files/precellar*.whl | |
build-wheel: | |
needs: build-and-test | |
if: ${{ startsWith(github.ref, 'refs/tags/') || contains(github.event.head_commit.message, '[wheel]') }} | |
uses: regulatory-genomics/precellar/.github/workflows/wheels.yml@main | |
publish: | |
needs: build-wheel | |
runs-on: ubuntu-latest | |
permissions: | |
id-token: write | |
if: ${{ startsWith(github.ref, 'refs/tags') }} | |
steps: | |
- name: Download wheel files | |
uses: actions/download-artifact@v4 | |
with: | |
path: dist | |
pattern: precellar-* | |
merge-multiple: true | |
- name: Publish to PyPI | |
uses: pypa/gh-action-pypi-publish@v1.8.14 |