build-documentation #68
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| name: build-documentation | |
| on: | |
| workflow_run: | |
| workflows: [test-python-package] | |
| types: | |
| - completed | |
| jobs: | |
| build_docs: | |
| runs-on: ubuntu-latest | |
| if: ${{ github.event.workflow_run.conclusion == 'success' }} | |
| steps: | |
| - name: Checkout code | |
| uses: nschloe/action-cached-lfs-checkout@v1 | |
| with: | |
| ref: ${{ github.event.workflow_run.head_sha }} | |
| - uses: actions/setup-python@v5 | |
| name: Install Python | |
| with: | |
| python-version: '3.10' | |
| - name: Install dependency | |
| run: | | |
| sudo apt-get install -y pandoc jq | |
| sudo pip install --upgrade pip | |
| pip install --user sphinx==7.* pydata-sphinx-theme==0.15.* pandoc nbsphinx \ | |
| Pygments==2.16.* sphinx-autodoc-typehints myst-parser \ | |
| markupsafe==2.1.* sphinx-plotly-directive | |
| - name: Download wheel files from artifacts | |
| id: download-artifact | |
| uses: dawidd6/action-download-artifact@v2 | |
| with: | |
| workflow: test_python.yml | |
| commit: ${{ github.event.workflow_run.head_sha }} | |
| name: wheel-files | |
| path: wheel_files | |
| - name: Install wheel files | |
| run: pip install --user wheel_files/*.whl | |
| - name: Build doc | |
| run: | | |
| sphinx-build ${GITHUB_WORKSPACE}/docs _build/html | |
| touch _build/html/.nojekyll | |
| - name: Get SnapATAC2 version | |
| id: get_version | |
| run: | | |
| VERSION_NUMBER=$(python -c "import precellar;print('.'.join(precellar.__version__.split('.')[:2]))") | |
| echo $VERSION_NUMBER | |
| echo "VERSION=$VERSION_NUMBER" >> $GITHUB_ENV | |
| IS_DEV=$(python -c "import precellar;print('dev' in precellar.__version__)") | |
| echo $IS_DEV | |
| BRANCH_NAME=${{ github.event.workflow_run.head_branch }} | |
| if [[ $IS_DEV == "True" && $BRANCH_NAME == "main" ]]; then | |
| echo "DEPLOY_DEV=true" >> $GITHUB_ENV | |
| elif [[ $BRANCH_NAME =~ ^v[0-9]+ || $BRANCH_NAME == "main" ]]; then | |
| echo "DEPLOY_VERSION=true" >> $GITHUB_ENV | |
| fi | |
| - name: Deploy 🚀 | |
| uses: JamesIves/github-pages-deploy-action@v4 | |
| if: ${{ env.DEPLOY_DEV == 'true' }} | |
| with: | |
| single-commit: true | |
| branch: gh-pages | |
| folder: _build/html | |
| clean: true | |
| target-folder: /version/dev/ | |
| - name: Deploy (version) 🚀 | |
| uses: JamesIves/github-pages-deploy-action@v4 | |
| if: ${{ env.DEPLOY_VERSION == 'true' }} | |
| with: | |
| single-commit: true | |
| branch: gh-pages | |
| folder: _build/html | |
| clean: true | |
| target-folder: /version/${{ env.VERSION }}/ | |
| - name: Fetch JSON and Get Preferred Version | |
| run: | | |
| #JSON=$(cat ${GITHUB_WORKSPACE}/docs/_static/versions.json) | |
| JSON=$(curl -s "https://raw.githubusercontent.com/regulatory-genomics/precellar/main/docs/_static/versions.json") | |
| VERSION=$(echo "$JSON" | jq -r '.[] | select(.preferred == true) | .version') | |
| echo "PREFERRED_VERSION=$VERSION" >> $GITHUB_ENV | |
| echo "Preferred version is $VERSION" | |
| - name: Checkout code from gh-pages branch into folder | |
| uses: actions/checkout@v2 | |
| with: | |
| ref: 'gh-pages' | |
| path: 'gh-pages-folder' | |
| - name: Deploy (preferred version) | |
| uses: JamesIves/github-pages-deploy-action@v4 | |
| with: | |
| single-commit: true | |
| branch: gh-pages | |
| folder: gh-pages-folder/version/${{ env.PREFERRED_VERSION }} | |
| clean: true | |
| clean-exclude: version |