Bump cookiecutter template to 6c467f (#186)

# Changes

- bumped cookiecutter template to
robert-koch-institut/mex-template@6c467f

---------

Co-authored-by: Nicolas Drebenstedt <drebenstedtn@rki.de>

.cruft.json

@@ -1,6 +1,6 @@
 {
   "template": "https://github.com/robert-koch-institut/mex-template",
-  "commit": "fca460e90134ef8c10f54d491aa80891509b1b6c",
+  "commit": "6c467f8809dcc640c3b7aab80e42f3af1f89b1bd",
   "checkout": null,
   "context": {
     "cookiecutter": {

.github/workflows/testing.yml

@@ -27,7 +27,7 @@ jobs:
 
     services:
       neo4j:
-        image: neo4j:5.24-community
+        image: neo4j:5.25-community
         env:
           NEO4J_AUTH: neo4j/password
         ports:

.pre-commit-config.yaml

@@ -3,7 +3,7 @@ default_language_version:
   python: python3.11
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.6.5
+    rev: v0.7.2
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix]
@@ -25,7 +25,7 @@ repos:
       - id: fix-byte-order-marker
         name: byte-order
   - repo: https://github.com/pdm-project/pdm
-    rev: 2.18.2
+    rev: 2.20.0.post1
     hooks:
       - id: pdm-lock-check
         name: pdm

README.md

@@ -9,7 +9,7 @@ Metadata editor web application.
 [![open-code](https://github.com/robert-koch-institut/mex-editor/actions/workflows/open-code.yml/badge.svg)](https://gitlab.opencode.de/robert-koch-institut/mex/mex-editor)
 [![testing](https://github.com/robert-koch-institut/mex-editor/actions/workflows/testing.yml/badge.svg)](https://github.com/robert-koch-institut/mex-editor/actions/workflows/testing.yml)
 
-## project
+## Project
 
 The Metadata Exchange (MEx) project is committed to improve the retrieval of RKI
 research data and projects. How? By focusing on metadata: instead of providing the
@@ -39,26 +39,27 @@ data Findable, Accessible, Interoperable and Reusable.
 **Contact** \
 For more information, please feel free to email us at [mex@rki.de](mailto:mex@rki.de).
 
-### Publisher of this document
+### Publisher
+
 **Robert Koch-Institut** \
 Nordufer 20 \
 13353 Berlin \
 Germany
 
-## package
+## Package
 
 The `mex-editor` is a browser application that allows creating and editing rules to
 non-destructively manipulate metadata. This can be used to enrich data with manual input
 or insert new data from scratch.
 
-## license
+## License
 
 This package is licensed under the [MIT license](/LICENSE). All other software
 components of the MEx project are open-sourced under the same license as well.
 
-## development
+## Development
 
-### installation
+### Installation
 
 - on unix, consider using pyenv https://github.com/pyenv/pyenv
   - get pyenv `curl https://pyenv.run | bash`
@@ -71,37 +72,37 @@ components of the MEx project are open-sourced under the same license as well.
   - switch version `pyenv global 3.11`
   - run `.\mex.bat install`
 
-### linting and testing
+### Linting and testing
 
 - run all linters with `pdm lint`
 - run only unit tests with `pdm unit`
 - run unit and integration tests with `pdm test`
   - for integration tests you need a local `mex-backend`, `neo4j` and `mex-editor`
 
-### updating dependencies
+### Updating dependencies
 
 - update boilerplate files with `cruft update`
 - update global requirements in `requirements.txt` manually
 - update git hooks with `pre-commit autoupdate`
 - update package dependencies using `pdm update-all`
 - update github actions in `.github/workflows/*.yml` manually
 
-### creating release
+### Creating release
 
 - run `pdm release RULE` to release a new version where RULE determines which part of
   the version to update and is one of `major`, `minor`, `patch`.
 
-### container workflow
+### Container workflow
 
 - build image with `make image`
 - run directly using docker `make run`
 - start with docker compose `make start`
 
-## commands
+## Commands
 
 - run `pdm run {command} --help` to print instructions
 - run `pdm run {command} --debug` for interactive debugging
 
-### editor
+### Editor
 
 - `pdm run editor run` starts the editor service

mex/editor/edit/state.py

@@ -20,17 +20,17 @@ class EditState(State):
 
     def refresh(self) -> None:
         """Refresh the search results."""
-        # TODO: use the user auth for backend requests (stop-gap MX-1616)
+        # TODO(ND): use the user auth for backend requests (stop-gap MX-1616)
         connector = BackendApiConnector.get()
 
-        # TODO: use a specialized extracted-item search method
+        # TODO(ND): use a specialized extracted-item search method
         response = connector.request(
             "GET", f"extracted-item?stableTargetId={self.item_id}"
         )
         items = _BackendSearchResponse.model_validate(response).items
         self.fields = self.extracted_to_fields(items)
 
-        # TODO: use title of merged item instead of title of first item
+        # TODO(ND): use title of merged item instead of title of first item
         self.item_title = render_model_title(items[0])
 
     @staticmethod

mex/editor/search/state.py

@@ -76,17 +76,17 @@ def go_to_next_page(self) -> None:
 
     def refresh(self) -> None:
         """Refresh the search results."""
-        # TODO: use the user auth for backend requests (stop-gap MX-1616)
+        # TODO(ND): use the user auth for backend requests (stop-gap MX-1616)
         connector = BackendApiConnector.get()
 
-        # TODO: use a specialized merged-item search method (stop-gap MX-1581)
+        # TODO(ND): use a specialized merged-item search method (stop-gap MX-1581)
         try:
             response = connector.request(
                 "GET",
                 "merged-item",
                 params={
                     "q": self.query_string,
-                    "entityType": [k for k, v in self.entity_types.items() if v],  # type: ignore
+                    "entityType": [k for k, v in self.entity_types.items() if v],
                     "skip": str(self.limit * (self.current_page - 1)),
                     "limit": str(self.limit),
                 },