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joelnitta committed Jul 6, 2021
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The goal of canaper is to enable categorical analysis of neo- and paleo-endemism (CANAPE) in R.

**NOTE**: This package is in early development. There may be major, breaking changes to functionality in the near future. If you use this package, I highly recommend using a package manager like [renv](https://rstudio.github.io/renv/articles/renv.html).

## Installation

You can install canaper from [GitHub](https://github.com/) with:
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21 changes: 13 additions & 8 deletions README.md
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The goal of canaper is to enable categorical analysis of neo- and
paleo-endemism (CANAPE) in R.

**NOTE**: This package is in early development. There may be major,
breaking changes to functionality in the near future. If you use this
package, I highly recommend using a package manager like
[renv](https://rstudio.github.io/renv/articles/renv.html).

## Installation

You can install canaper from [GitHub](https://github.com/) with:
Expand Down Expand Up @@ -86,19 +91,19 @@ let’s just look at a subset of them:
``` r
rand_test_results[,1:9]
#> pd_obs pd_rand_mean pd_rand_sd pd_obs_z pd_obs_c_upper
#> clump1 0.3018868 0.4694340 0.03489188 -4.801896 0
#> clump2a 0.3207547 0.4688679 0.03417284 -4.334237 0
#> clump2b 0.3396226 0.4683019 0.03073875 -4.186223 0
#> clump4 0.4150943 0.4656604 0.03515881 -1.438218 6
#> even 0.5660377 0.4696226 0.03576872 2.695514 100
#> random 0.5094340 0.4647170 0.03722303 1.201326 80
#> clump1 0.3018868 0.4724528 0.03115012 -5.475614 0
#> clump2a 0.3207547 0.4688679 0.03448708 -4.294744 0
#> clump2b 0.3396226 0.4628302 0.03470329 -3.550314 0
#> clump4 0.4150943 0.4715094 0.03333333 -1.692453 4
#> even 0.5660377 0.4643396 0.03137728 3.241138 100
#> random 0.5094340 0.4579245 0.03810143 1.351903 87
#> pd_obs_c_lower pd_obs_q pd_obs_p_upper pd_obs_p_lower
#> clump1 100 100 0.00 1.00
#> clump2a 100 100 0.00 1.00
#> clump2b 100 100 0.00 1.00
#> clump4 91 100 0.06 0.91
#> clump4 92 100 0.04 0.92
#> even 0 100 1.00 0.00
#> random 4 100 0.80 0.04
#> random 4 100 0.87 0.04
```

This is a summary of the columns:
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