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Fmri to dataset #127

Closed
wants to merge 26 commits into from
Closed

Fmri to dataset #127

wants to merge 26 commits into from

Commits on Sep 17, 2020

  1. class for parsing derivatives subdirectory in BIDS format

    @adkipnis
    adkipnis committed Sep 17, 2020
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  2. added / refined subsetting methods; added function to flatten lists; … 

    …better __repr__ method
    @adkipnis
    adkipnis committed Sep 17, 2020
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  3. added docstrings and function to load SPM beta coefficients optionall… 

    …y using dictionary to subset beta coefficients
    @adkipnis
    adkipnis committed Sep 17, 2020
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  4. added option to not provide a dictionary for load_SPM_beta_images()

    @adkipnis
    adkipnis committed Sep 17, 2020
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Commits on Sep 18, 2020

  1. np.stack for list of 3d images to 4d array

    @adkipnis
    adkipnis committed Sep 18, 2020
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  2. renamed pooling.py to fmri.py

    @adkipnis
    adkipnis committed Sep 18, 2020
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  3. inherited class for parsed data of only one subject; methods for load… 

    …ing betas / residuals from SPM output; methods for pooling and saving data as NIfTi and CSV files
    @adkipnis
    adkipnis committed Sep 18, 2020
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  4. started coding unit tests

    @adkipnis
    adkipnis committed Sep 18, 2020
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  5. fixed __init__ bugs, first parsing unit tests

    @adkipnis
    adkipnis committed Sep 18, 2020
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  6. example dataset

    @adkipnis
    adkipnis committed Sep 18, 2020
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  7. minor bug fixes and full unit tests for all things pooling

    @adkipnis
    adkipnis committed Sep 18, 2020
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  8. CodeFactor fixes

    @adkipnis
    adkipnis committed Sep 18, 2020
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  9. CodeFactor fixes

    @adkipnis
    adkipnis committed Sep 18, 2020
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  10. starterd coding class to read in 4d nifti files

    @adkipnis
    adkipnis committed Sep 18, 2020
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Commits on Sep 19, 2020

  1. added nibabel and pandas to requirements.txt

    @adkipnis
    adkipnis committed Sep 19, 2020
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Commits on Sep 21, 2020

  1. Merge branch 'master' into fmri-to-dataset

    @HeikoSchuett
    HeikoSchuett committed Sep 21, 2020
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Commits on Oct 20, 2020

  1. Merge branch 'master' into fmri-to-dataset

    @HeikoSchuett
    HeikoSchuett committed Oct 20, 2020
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Commits on Jun 23, 2021

  1. merge main

    @HeikoSchuett
    HeikoSchuett committed Jun 23, 2021
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  2. updated fmri-tests to folder structure

    @HeikoSchuett
    HeikoSchuett committed Jun 23, 2021
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Commits on Jun 27, 2021

  1. fix example data for test_fmri.py

    @adkipnis
    adkipnis committed Jun 27, 2021
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Commits on Dec 18, 2021

  1. Merge branch 'main' into fmri-to-dataset

    @HeikoSchuett
    HeikoSchuett authored Dec 18, 2021
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  2. stylefix fmri

    @HeikoSchuett
    HeikoSchuett committed Dec 18, 2021
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  3. moved fmri to io

    @HeikoSchuett
    HeikoSchuett committed Dec 18, 2021
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  4. added init to nifti_filenames

    @HeikoSchuett
    HeikoSchuett committed Dec 18, 2021
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  5. style fmri_test

    @HeikoSchuett
    HeikoSchuett committed Dec 18, 2021
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Commits on Sep 13, 2023

  1. Merge branch 'main' into fmri-to-dataset

    @JasperVanDenBosch
    JasperVanDenBosch committed Sep 13, 2023
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