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# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
name: Python package
on:
[push]
jobs:
build:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: ["3.8", "3.9", "3.10", "3.11"]
steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v3
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install flake8 pytest pytest-cov
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
pip install -e .[all]
- name: Test with pytest
run: |
pytest bioino --doctest-modules --junitxml=tests/test-results.xml --cov=com --cov-report=xml --cov-report=html
- name: Lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Upload pytest test results
uses: actions/upload-artifact@v3
with:
name: pytest-results-${{ matrix.python-version }}
path: junit/test-results-${{ matrix.python-version }}.xml
# Use always() to always run this step to publish test results when there are test failures
if: ${{ always() }}