Update workflows

.github/workflows/python-package.yml

@@ -4,10 +4,7 @@
 name: Python package
 
 on:
-  push:
-    branches: [ $default-branch ]
-  pull_request:
-    branches: [ $default-branch ]
+  [push]
 
 jobs:
   build:
@@ -29,12 +26,20 @@ jobs:
         python -m pip install --upgrade pip
         python -m pip install flake8 pytest pytest-cov
         if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
+        pip install -e .[all]
+    - name: Test with pytest
+      run: |
+        pytest bioino --doctest-modules --junitxml=tests/test-results.xml --cov=com --cov-report=xml --cov-report=html
     - name: Lint with flake8
       run: |
         # stop the build if there are Python syntax errors or undefined names
         flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
         # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
         flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
-    - name: Test with pytest
-      run: |
-        pytest bioino --doctest-modules --junitxml=tests/test-results.xml --cov=com --cov-report=xml --cov-report=html
+    - name: Upload pytest test results
+      uses: actions/upload-artifact@v3
+      with:
+          name: pytest-results-${{ matrix.python-version }}
+          path: junit/test-results-${{ matrix.python-version }}.xml
+      # Use always() to always run this step to publish test results when there are test failures
+      if: ${{ always() }}

.github/workflows/python-publish.yml

@@ -21,7 +21,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ["3.11"]
+        python-version: ["3.8"]
 
     steps:
     - uses: actions/checkout@v3