Update SRA mode test #8
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| name: Nextflow test | |
| on: [push] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: 3.12 | |
| mamba-version: "*" | |
| channels: conda-forge,defaults | |
| channel-priority: true | |
| - uses: nf-core/setup-nextflow@v1 | |
| - name: Test Nextflow pipeline | |
| run: | | |
| pwd | |
| ls | |
| #nextflow run ${GITHUB_WORKSPACE} -c test/local/nextflow.config -profile gh -stub | |
| nextflow run ${GITHUB_WORKSPACE} -c test/sra/nextflow.config -profile gh -stub |